Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2157 and HP15_2158 are separated by 213 nucleotides HP15_2158 and HP15_2159 are separated by 117 nucleotides HP15_2159 and HP15_2160 overlap by 4 nucleotides HP15_2160 and HP15_2161 are separated by 11 nucleotides
HP15_2157: HP15_2157 - methyl-accepting chemotaxis protein, at 2,263,284 to 2,265,290
_2157
HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246
_2158
HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471
_2159
HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743
_2160
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
Position (kb)
2265
2266
2267
2268 Strain fitness (log2 ratio)
-1
0
1 at 2264.593 kb on + strand, within HP15_2157 at 2264.745 kb on - strand, within HP15_2157 at 2264.790 kb on - strand, within HP15_2157 at 2264.806 kb on - strand, within HP15_2157 at 2264.840 kb on + strand, within HP15_2157 at 2264.840 kb on + strand, within HP15_2157 at 2264.943 kb on + strand, within HP15_2157 at 2264.946 kb on - strand, within HP15_2157 at 2264.964 kb on + strand, within HP15_2157 at 2265.215 kb on + strand at 2265.354 kb on + strand at 2265.370 kb on + strand at 2265.414 kb on + strand at 2265.429 kb on + strand at 2265.439 kb on + strand at 2265.444 kb on + strand at 2265.612 kb on + strand at 2265.622 kb on - strand at 2265.793 kb on - strand, within HP15_2158 at 2265.803 kb on + strand, within HP15_2158 at 2265.833 kb on + strand, within HP15_2158 at 2265.987 kb on - strand, within HP15_2158 at 2266.152 kb on + strand, within HP15_2158 at 2266.163 kb on + strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.214 kb on + strand, within HP15_2158 at 2266.244 kb on - strand, within HP15_2158 at 2266.280 kb on - strand, within HP15_2158 at 2266.354 kb on + strand, within HP15_2158 at 2266.354 kb on + strand, within HP15_2158 at 2266.354 kb on + strand, within HP15_2158 at 2266.372 kb on - strand, within HP15_2158 at 2266.407 kb on - strand, within HP15_2158 at 2266.421 kb on - strand, within HP15_2158 at 2266.529 kb on + strand, within HP15_2158 at 2266.542 kb on + strand, within HP15_2158 at 2266.580 kb on - strand, within HP15_2158 at 2266.585 kb on + strand, within HP15_2158 at 2266.597 kb on + strand, within HP15_2158 at 2266.606 kb on + strand, within HP15_2158 at 2266.657 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.814 kb on - strand, within HP15_2158 at 2266.838 kb on + strand, within HP15_2158 at 2267.089 kb on + strand at 2267.097 kb on - strand at 2267.119 kb on + strand at 2267.161 kb on + strand at 2267.210 kb on + strand at 2267.247 kb on + strand at 2267.571 kb on + strand, within HP15_2160 at 2267.640 kb on + strand, within HP15_2160 at 2267.695 kb on + strand, within HP15_2160 at 2267.764 kb on + strand at 2267.801 kb on + strand at 2267.877 kb on + strand, within HP15_2161 at 2267.954 kb on + strand, within HP15_2161 at 2268.119 kb on + strand, within HP15_2161
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 2,264,593 + HP15_2157 0.65 +0.2 2,264,745 - HP15_2157 0.73 -1.0 2,264,790 - HP15_2157 0.75 +0.2 2,264,806 - HP15_2157 0.76 -0.2 2,264,840 + HP15_2157 0.78 +0.7 2,264,840 + HP15_2157 0.78 +0.6 2,264,943 + HP15_2157 0.83 +0.2 2,264,946 - HP15_2157 0.83 +0.1 2,264,964 + HP15_2157 0.84 +1.2 2,265,215 + +0.1 2,265,354 + +0.0 2,265,370 + +0.1 2,265,414 + +0.5 2,265,429 + +0.3 2,265,439 + +0.4 2,265,444 + +0.3 2,265,612 + +0.3 2,265,622 - -0.6 2,265,793 - HP15_2158 0.17 -0.0 2,265,803 + HP15_2158 0.17 +0.2 2,265,833 + HP15_2158 0.19 -0.3 2,265,987 - HP15_2158 0.28 +0.1 2,266,152 + HP15_2158 0.37 +0.2 2,266,163 + HP15_2158 0.38 +0.1 2,266,206 - HP15_2158 0.40 +0.9 2,266,206 - HP15_2158 0.40 +0.3 2,266,206 - HP15_2158 0.40 +0.8 2,266,214 + HP15_2158 0.41 +1.4 2,266,244 - HP15_2158 0.42 -0.4 2,266,280 - HP15_2158 0.45 -0.4 2,266,354 + HP15_2158 0.49 +0.2 2,266,354 + HP15_2158 0.49 -0.0 2,266,354 + HP15_2158 0.49 +0.2 2,266,372 - HP15_2158 0.50 -0.5 2,266,407 - HP15_2158 0.52 +0.7 2,266,421 - HP15_2158 0.53 +0.4 2,266,529 + HP15_2158 0.59 +0.9 2,266,542 + HP15_2158 0.60 -1.2 2,266,580 - HP15_2158 0.62 +0.1 2,266,585 + HP15_2158 0.62 +0.1 2,266,597 + HP15_2158 0.63 +0.3 2,266,606 + HP15_2158 0.63 -0.5 2,266,657 + HP15_2158 0.66 +1.0 2,266,721 + HP15_2158 0.70 -0.0 2,266,721 + HP15_2158 0.70 -0.2 2,266,814 - HP15_2158 0.75 +0.3 2,266,838 + HP15_2158 0.77 +0.1 2,267,089 + +0.2 2,267,097 - +0.1 2,267,119 + +0.9 2,267,161 + +0.6 2,267,210 + +0.1 2,267,247 + +0.2 2,267,571 + HP15_2160 0.37 +0.1 2,267,640 + HP15_2160 0.62 +0.4 2,267,695 + HP15_2160 0.82 +0.2 2,267,764 + +0.1 2,267,801 + +0.3 2,267,877 + HP15_2161 0.15 -1.7 2,267,954 + HP15_2161 0.25 +0.0 2,268,119 + HP15_2161 0.45 +0.2
Or see this region's nucleotide sequence