Strain Fitness in Marinobacter adhaerens HP15 around HP15_2152

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2151 and HP15_2152 are separated by 21 nucleotidesHP15_2152 and HP15_2153 are separated by 329 nucleotides HP15_2151: HP15_2151 - conserved hypothetical protein, at 2,255,198 to 2,256,757 _2151 HP15_2152: HP15_2152 - membrane-associated lipoprotein involved in thiamine biosynthesis, at 2,256,779 to 2,257,744 _2152 HP15_2153: HP15_2153 - extracellular ligand-binding receptor, at 2,258,074 to 2,259,323 _2153 Position (kb) 2256 2257 2258Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2255.804 kb on - strand, within HP15_2151at 2255.859 kb on + strand, within HP15_2151at 2255.978 kb on - strand, within HP15_2151at 2256.007 kb on + strand, within HP15_2151at 2256.278 kb on + strand, within HP15_2151at 2256.322 kb on + strand, within HP15_2151at 2256.435 kb on + strand, within HP15_2151at 2256.467 kb on - strand, within HP15_2151at 2256.549 kb on + strand, within HP15_2151at 2256.582 kb on - strand, within HP15_2151at 2256.607 kb on + strandat 2256.701 kb on + strandat 2256.701 kb on + strandat 2256.701 kb on + strandat 2256.701 kb on + strandat 2256.709 kb on - strandat 2256.709 kb on - strandat 2256.709 kb on - strandat 2256.709 kb on - strandat 2256.781 kb on + strandat 2256.796 kb on + strandat 2256.804 kb on - strandat 2256.804 kb on - strandat 2256.804 kb on - strandat 2256.807 kb on + strandat 2256.841 kb on + strandat 2257.242 kb on + strand, within HP15_2152at 2257.247 kb on + strand, within HP15_2152at 2257.265 kb on - strand, within HP15_2152at 2257.268 kb on - strand, within HP15_2152at 2257.414 kb on - strand, within HP15_2152at 2257.418 kb on + strand, within HP15_2152at 2257.504 kb on + strand, within HP15_2152at 2257.704 kb on - strandat 2257.783 kb on + strandat 2257.829 kb on + strandat 2257.903 kb on + strandat 2258.123 kb on + strandat 2258.126 kb on + strandat 2258.188 kb on + strandat 2258.312 kb on - strand, within HP15_2153at 2258.369 kb on - strand, within HP15_2153at 2258.524 kb on - strand, within HP15_2153at 2258.531 kb on + strand, within HP15_2153at 2258.535 kb on + strand, within HP15_2153at 2258.605 kb on + strand, within HP15_2153

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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2,255,804 - HP15_2151 0.39 -0.1
2,255,859 + HP15_2151 0.42 +0.2
2,255,978 - HP15_2151 0.50 -0.6
2,256,007 + HP15_2151 0.52 -0.8
2,256,278 + HP15_2151 0.69 -0.0
2,256,322 + HP15_2151 0.72 -0.3
2,256,435 + HP15_2151 0.79 +0.0
2,256,467 - HP15_2151 0.81 -0.0
2,256,549 + HP15_2151 0.87 +0.7
2,256,582 - HP15_2151 0.89 +0.1
2,256,607 + +0.0
2,256,701 + +0.0
2,256,701 + +0.2
2,256,701 + +0.2
2,256,701 + +0.7
2,256,709 - +0.3
2,256,709 - +0.3
2,256,709 - -0.0
2,256,709 - +3.7
2,256,781 + -0.1
2,256,796 + +0.0
2,256,804 - +0.1
2,256,804 - +0.2
2,256,804 - -0.1
2,256,807 + +0.2
2,256,841 + -1.1
2,257,242 + HP15_2152 0.48 +0.1
2,257,247 + HP15_2152 0.48 -0.2
2,257,265 - HP15_2152 0.50 -0.2
2,257,268 - HP15_2152 0.51 -1.9
2,257,414 - HP15_2152 0.66 -1.0
2,257,418 + HP15_2152 0.66 -1.4
2,257,504 + HP15_2152 0.75 +1.0
2,257,704 - +0.4
2,257,783 + -1.6
2,257,829 + -0.1
2,257,903 + +0.3
2,258,123 + -0.0
2,258,126 + -1.9
2,258,188 + +0.9
2,258,312 - HP15_2153 0.19 +0.1
2,258,369 - HP15_2153 0.24 -0.2
2,258,524 - HP15_2153 0.36 -0.1
2,258,531 + HP15_2153 0.37 -1.5
2,258,535 + HP15_2153 0.37 +0.6
2,258,605 + HP15_2153 0.42 -0.2

Or see this region's nucleotide sequence