Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21520 and PGA1_c21525 are separated by 202 nucleotides PGA1_c21525 and PGA1_c21530 are separated by 88 nucleotides PGA1_c21530 and PGA1_c21540 are separated by 6 nucleotides
PGA1_c21520: PGA1_c21520 - hypothetical protein, at 2,230,107 to 2,231,042
_c21520
PGA1_c21525: PGA1_c21525 - hypothetical protein, at 2,231,245 to 2,231,850
_c21525
PGA1_c21530: PGA1_c21530 - hypothetical protein, at 2,231,939 to 2,232,466
_c21530
PGA1_c21540: PGA1_c21540 - propionyl-CoA carboxylase alpha chain, at 2,232,473 to 2,234,518
_c21540
Position (kb)
2231
2232
2233 Strain fitness (log2 ratio)
-2
-1
0
1 at 2231.051 kb on - strand at 2231.051 kb on - strand at 2231.056 kb on - strand at 2231.056 kb on - strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.106 kb on - strand at 2231.188 kb on + strand at 2231.196 kb on - strand at 2231.766 kb on + strand, within PGA1_c21525 at 2232.081 kb on - strand, within PGA1_c21530 at 2232.154 kb on - strand, within PGA1_c21530 at 2232.198 kb on + strand, within PGA1_c21530 at 2232.206 kb on - strand, within PGA1_c21530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 2,231,051 - +0.1 2,231,051 - +0.3 2,231,056 - -2.0 2,231,056 - +1.1 2,231,098 + -0.3 2,231,098 + -0.6 2,231,098 + -0.6 2,231,098 + -0.6 2,231,106 - -0.9 2,231,188 + +0.0 2,231,196 - -0.7 2,231,766 + PGA1_c21525 0.86 +0.2 2,232,081 - PGA1_c21530 0.27 -2.1 2,232,154 - PGA1_c21530 0.41 +0.4 2,232,198 + PGA1_c21530 0.49 -0.4 2,232,206 - PGA1_c21530 0.51 +0.1
Or see this region's nucleotide sequence