Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1565 and HP15_1566 are separated by 84 nucleotides HP15_1566 and HP15_1567 are separated by 99 nucleotides HP15_1567 and HP15_1568 overlap by 17 nucleotides
HP15_1565: HP15_1565 - methyl-accepting chemotaxis sensory transducer, at 1,644,922 to 1,646,541
_1565
HP15_1566: HP15_1566 - conserved hypothetical protein, at 1,646,626 to 1,646,877
_1566
HP15_1567: HP15_1567 - two component transcriptional regulator, LuxR family, at 1,646,977 to 1,647,639
_1567
HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485
_1568
Position (kb)
1646
1647
1648 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1646.017 kb on - strand, within HP15_1565 at 1646.017 kb on - strand, within HP15_1565 at 1646.065 kb on + strand, within HP15_1565 at 1646.106 kb on - strand, within HP15_1565 at 1646.144 kb on - strand, within HP15_1565 at 1646.167 kb on - strand, within HP15_1565 at 1646.178 kb on - strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.199 kb on - strand, within HP15_1565 at 1646.199 kb on - strand, within HP15_1565 at 1646.291 kb on - strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.303 kb on - strand, within HP15_1565 at 1646.738 kb on + strand, within HP15_1566 at 1646.741 kb on - strand, within HP15_1566 at 1646.757 kb on + strand, within HP15_1566 at 1646.772 kb on + strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.795 kb on - strand, within HP15_1566 at 1646.800 kb on - strand, within HP15_1566 at 1646.877 kb on + strand at 1646.895 kb on + strand at 1646.982 kb on - strand at 1647.010 kb on - strand at 1647.498 kb on - strand, within HP15_1567 at 1647.498 kb on - strand, within HP15_1567 at 1647.509 kb on + strand, within HP15_1567 at 1647.952 kb on + strand, within HP15_1568 at 1647.995 kb on + strand, within HP15_1568 at 1648.168 kb on + strand, within HP15_1568 at 1648.540 kb on + strand, within HP15_1568 at 1648.600 kb on + strand, within HP15_1568 at 1648.637 kb on + strand, within HP15_1568
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 1,646,017 - HP15_1565 0.68 +1.0 1,646,017 - HP15_1565 0.68 -0.3 1,646,065 + HP15_1565 0.71 +0.5 1,646,106 - HP15_1565 0.73 -1.1 1,646,144 - HP15_1565 0.75 -0.8 1,646,167 - HP15_1565 0.77 -0.2 1,646,178 - HP15_1565 0.78 -0.5 1,646,191 + HP15_1565 0.78 +0.2 1,646,191 + HP15_1565 0.78 +0.4 1,646,191 + HP15_1565 0.78 +0.2 1,646,191 + HP15_1565 0.78 -1.0 1,646,199 - HP15_1565 0.79 +0.1 1,646,199 - HP15_1565 0.79 +1.0 1,646,291 - HP15_1565 0.85 +0.3 1,646,295 + HP15_1565 0.85 -0.1 1,646,295 + HP15_1565 0.85 -1.1 1,646,295 + HP15_1565 0.85 -0.2 1,646,303 - HP15_1565 0.85 -0.0 1,646,738 + HP15_1566 0.44 +0.4 1,646,741 - HP15_1566 0.46 +0.1 1,646,757 + HP15_1566 0.52 -0.3 1,646,772 + HP15_1566 0.58 +0.1 1,646,780 - HP15_1566 0.61 -0.6 1,646,780 - HP15_1566 0.61 -0.6 1,646,795 - HP15_1566 0.67 +0.2 1,646,800 - HP15_1566 0.69 -0.0 1,646,877 + +0.1 1,646,895 + -0.2 1,646,982 - +1.0 1,647,010 - +1.1 1,647,498 - HP15_1567 0.79 +1.1 1,647,498 - HP15_1567 0.79 +3.8 1,647,509 + HP15_1567 0.80 +1.0 1,647,952 + HP15_1568 0.18 +0.1 1,647,995 + HP15_1568 0.20 -0.6 1,648,168 + HP15_1568 0.29 +0.7 1,648,540 + HP15_1568 0.49 +0.4 1,648,600 + HP15_1568 0.52 +1.1 1,648,637 + HP15_1568 0.54 +0.4
Or see this region's nucleotide sequence