Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.974.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.973.1 and Xcc-8004.974.1 overlap by 4 nucleotidesXcc-8004.974.1 and Xcc-8004.976.1 are separated by 12 nucleotides Xcc-8004.973.1: Xcc-8004.973.1 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 925,326 to 926,822 Xcc-8004.973.1 Xcc-8004.974.1: Xcc-8004.974.1 - two-component system regulatory protein, at 926,819 to 927,661 Xcc-8004.974.1 Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771 Xcc-8004.976.1 Position (kb) 926 927 928Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 926.512 kb on + strand, within Xcc-8004.973.1at 926.512 kb on + strand, within Xcc-8004.973.1at 926.513 kb on - strand, within Xcc-8004.973.1at 926.701 kb on + strandat 926.701 kb on + strandat 926.701 kb on + strandat 926.701 kb on + strandat 926.702 kb on - strandat 926.850 kb on + strandat 926.850 kb on + strandat 926.850 kb on + strandat 926.850 kb on + strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.946 kb on + strand, within Xcc-8004.974.1at 926.946 kb on + strand, within Xcc-8004.974.1at 926.947 kb on - strand, within Xcc-8004.974.1at 926.974 kb on - strand, within Xcc-8004.974.1at 927.068 kb on - strand, within Xcc-8004.974.1at 927.127 kb on - strand, within Xcc-8004.974.1at 927.127 kb on - strand, within Xcc-8004.974.1at 927.232 kb on - strand, within Xcc-8004.974.1at 927.271 kb on + strand, within Xcc-8004.974.1at 927.271 kb on + strand, within Xcc-8004.974.1at 927.271 kb on + strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.377 kb on + strand, within Xcc-8004.974.1at 927.377 kb on + strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.450 kb on + strand, within Xcc-8004.974.1at 927.451 kb on - strand, within Xcc-8004.974.1at 927.451 kb on - strand, within Xcc-8004.974.1at 927.631 kb on + strandat 927.631 kb on + strandat 927.632 kb on - strandat 927.968 kb on + strand, within Xcc-8004.976.1at 927.969 kb on - strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.390 kb on + strand, within Xcc-8004.976.1at 928.424 kb on + strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.556 kb on + strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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926,512 + Xcc-8004.973.1 0.79 +1.5
926,512 + Xcc-8004.973.1 0.79 +0.2
926,513 - Xcc-8004.973.1 0.79 -0.4
926,701 + -0.4
926,701 + -0.1
926,701 + -0.6
926,701 + +0.4
926,702 - +0.6
926,850 + +0.1
926,850 + +0.6
926,850 + -1.2
926,850 + -1.2
926,851 - -0.0
926,851 - -1.0
926,851 - -0.8
926,851 - +0.9
926,851 - +1.2
926,851 - +0.5
926,851 - +0.2
926,946 + Xcc-8004.974.1 0.15 +1.0
926,946 + Xcc-8004.974.1 0.15 +0.3
926,947 - Xcc-8004.974.1 0.15 +0.2
926,974 - Xcc-8004.974.1 0.18 -0.1
927,068 - Xcc-8004.974.1 0.30 -0.5
927,127 - Xcc-8004.974.1 0.37 -0.5
927,127 - Xcc-8004.974.1 0.37 +0.8
927,232 - Xcc-8004.974.1 0.49 +1.6
927,271 + Xcc-8004.974.1 0.54 +4.7
927,271 + Xcc-8004.974.1 0.54 +1.1
927,271 + Xcc-8004.974.1 0.54 -1.8
927,272 - Xcc-8004.974.1 0.54 +0.4
927,272 - Xcc-8004.974.1 0.54 -0.9
927,272 - Xcc-8004.974.1 0.54 -0.7
927,272 - Xcc-8004.974.1 0.54 -2.9
927,272 - Xcc-8004.974.1 0.54 +1.5
927,272 - Xcc-8004.974.1 0.54 +0.4
927,377 + Xcc-8004.974.1 0.66 -0.4
927,377 + Xcc-8004.974.1 0.66 +0.4
927,378 - Xcc-8004.974.1 0.66 -0.6
927,378 - Xcc-8004.974.1 0.66 -0.8
927,378 - Xcc-8004.974.1 0.66 -1.4
927,378 - Xcc-8004.974.1 0.66 +1.9
927,450 + Xcc-8004.974.1 0.75 -1.8
927,451 - Xcc-8004.974.1 0.75 +0.7
927,451 - Xcc-8004.974.1 0.75 +1.2
927,631 + +1.1
927,631 + +1.5
927,632 - -0.1
927,968 + Xcc-8004.976.1 0.27 -1.4
927,969 - Xcc-8004.976.1 0.27 -0.0
928,127 + Xcc-8004.976.1 0.41 +0.2
928,127 + Xcc-8004.976.1 0.41 +0.4
928,127 + Xcc-8004.976.1 0.41 -1.8
928,127 + Xcc-8004.976.1 0.41 -0.1
928,128 - Xcc-8004.976.1 0.41 +0.6
928,128 - Xcc-8004.976.1 0.41 +0.5
928,128 - Xcc-8004.976.1 0.41 -2.5
928,205 - Xcc-8004.976.1 0.48 +0.1
928,205 - Xcc-8004.976.1 0.48 -0.7
928,205 - Xcc-8004.976.1 0.48 +1.0
928,390 + Xcc-8004.976.1 0.65 +0.2
928,424 + Xcc-8004.976.1 0.68 +1.8
928,425 - Xcc-8004.976.1 0.68 +0.5
928,425 - Xcc-8004.976.1 0.68 -0.0
928,425 - Xcc-8004.976.1 0.68 +1.1
928,556 + Xcc-8004.976.1 0.80 -1.9
928,557 - Xcc-8004.976.1 0.80 +0.2
928,557 - Xcc-8004.976.1 0.80 -0.5
928,557 - Xcc-8004.976.1 0.80 -0.6
928,557 - Xcc-8004.976.1 0.80 +1.0
928,562 + Xcc-8004.976.1 0.81 -0.1
928,562 + Xcc-8004.976.1 0.81 -0.9
928,562 + Xcc-8004.976.1 0.81 -0.8
928,563 - Xcc-8004.976.1 0.81 +1.3
928,563 - Xcc-8004.976.1 0.81 -1.2
928,563 - Xcc-8004.976.1 0.81 +0.3
928,563 - Xcc-8004.976.1 0.81 +0.8
928,563 - Xcc-8004.976.1 0.81 +1.2
928,563 - Xcc-8004.976.1 0.81 +0.4
928,658 + Xcc-8004.976.1 0.90 -1.1
928,658 + Xcc-8004.976.1 0.90 -1.2
928,658 + Xcc-8004.976.1 0.90 +0.1
928,658 + Xcc-8004.976.1 0.90 +0.4
928,659 - Xcc-8004.976.1 0.90 +0.8
928,659 - Xcc-8004.976.1 0.90 +2.0

Or see this region's nucleotide sequence