Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5044.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5041.1 and Xcc-8004.5042.1 overlap by 41 nucleotidesXcc-8004.5042.1 and Xcc-8004.5043.1 are separated by 346 nucleotidesXcc-8004.5043.1 and Xcc-8004.5044.1 are separated by 65 nucleotidesXcc-8004.5044.1 and Xcc-8004.5045.1 are separated by 163 nucleotides Xcc-8004.5041.1: Xcc-8004.5041.1 - FIG01211213: hypothetical protein, at 4,781,786 to 4,782,373 Xcc-8004.5041.1 Xcc-8004.5042.1: Xcc-8004.5042.1 - hypothetical protein, at 4,782,333 to 4,782,518 Xcc-8004.5042.1 Xcc-8004.5043.1: Xcc-8004.5043.1 - FIG01209879: hypothetical protein, at 4,782,865 to 4,783,137 Xcc-8004.5043.1 Xcc-8004.5044.1: Xcc-8004.5044.1 - Cobalt-zinc-cadmium resistance protein CzcD, at 4,783,203 to 4,784,204 Xcc-8004.5044.1 Xcc-8004.5045.1: Xcc-8004.5045.1 - Beta-xylosidase (EC 3.2.1.37), at 4,784,368 to 4,785,933 Xcc-8004.5045.1 Position (kb) 4783 4784 4785Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4782.247 kb on + strand, within Xcc-8004.5041.1at 4782.270 kb on + strand, within Xcc-8004.5041.1at 4782.271 kb on - strand, within Xcc-8004.5041.1at 4782.271 kb on - strand, within Xcc-8004.5041.1at 4782.297 kb on + strand, within Xcc-8004.5041.1at 4782.561 kb on + strandat 4782.561 kb on + strandat 4782.562 kb on - strandat 4782.562 kb on - strandat 4782.725 kb on + strandat 4782.725 kb on + strandat 4782.726 kb on - strandat 4782.867 kb on - strandat 4782.867 kb on - strandat 4782.875 kb on + strandat 4782.876 kb on - strandat 4782.876 kb on - strandat 4783.126 kb on + strandat 4783.126 kb on + strandat 4783.126 kb on + strandat 4783.126 kb on + strandat 4783.126 kb on + strandat 4783.126 kb on + strandat 4783.127 kb on - strandat 4783.127 kb on - strandat 4783.127 kb on - strandat 4783.127 kb on - strandat 4783.127 kb on - strandat 4783.127 kb on - strandat 4783.127 kb on - strandat 4783.127 kb on - strandat 4783.179 kb on + strandat 4783.180 kb on - strandat 4783.184 kb on + strandat 4783.184 kb on + strandat 4783.184 kb on + strandat 4783.184 kb on + strandat 4783.184 kb on + strandat 4783.184 kb on + strandat 4783.185 kb on - strandat 4783.185 kb on - strandat 4783.185 kb on - strandat 4783.185 kb on - strandat 4783.185 kb on - strandat 4783.185 kb on - strandat 4783.185 kb on - strandat 4783.379 kb on + strand, within Xcc-8004.5044.1at 4783.379 kb on + strand, within Xcc-8004.5044.1at 4783.380 kb on - strand, within Xcc-8004.5044.1at 4783.380 kb on - strand, within Xcc-8004.5044.1at 4783.469 kb on + strand, within Xcc-8004.5044.1at 4783.497 kb on + strand, within Xcc-8004.5044.1at 4783.498 kb on - strand, within Xcc-8004.5044.1at 4783.715 kb on + strand, within Xcc-8004.5044.1at 4783.715 kb on + strand, within Xcc-8004.5044.1at 4783.715 kb on + strand, within Xcc-8004.5044.1at 4783.716 kb on - strand, within Xcc-8004.5044.1at 4783.716 kb on - strand, within Xcc-8004.5044.1at 4783.716 kb on - strand, within Xcc-8004.5044.1at 4783.785 kb on + strand, within Xcc-8004.5044.1at 4783.785 kb on + strand, within Xcc-8004.5044.1at 4783.786 kb on - strand, within Xcc-8004.5044.1at 4784.202 kb on + strandat 4784.202 kb on + strandat 4784.203 kb on - strandat 4784.203 kb on - strandat 4784.203 kb on - strandat 4784.203 kb on - strandat 4784.212 kb on - strandat 4784.212 kb on - strandat 4784.385 kb on - strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.497 kb on + strandat 4784.498 kb on - strandat 4784.498 kb on - strandat 4784.498 kb on - strandat 4784.498 kb on - strandat 4784.593 kb on + strand, within Xcc-8004.5045.1at 4784.595 kb on + strand, within Xcc-8004.5045.1at 4784.662 kb on + strand, within Xcc-8004.5045.1at 4784.663 kb on - strand, within Xcc-8004.5045.1at 4784.663 kb on - strand, within Xcc-8004.5045.1at 4784.690 kb on - strand, within Xcc-8004.5045.1at 4784.779 kb on + strand, within Xcc-8004.5045.1at 4784.779 kb on + strand, within Xcc-8004.5045.1at 4784.780 kb on - strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.839 kb on + strand, within Xcc-8004.5045.1at 4784.840 kb on - strand, within Xcc-8004.5045.1at 4784.840 kb on - strand, within Xcc-8004.5045.1at 4784.840 kb on - strand, within Xcc-8004.5045.1at 4784.840 kb on - strand, within Xcc-8004.5045.1at 4784.840 kb on - strand, within Xcc-8004.5045.1at 4784.840 kb on - strand, within Xcc-8004.5045.1at 4784.840 kb on - strand, within Xcc-8004.5045.1at 4784.879 kb on + strand, within Xcc-8004.5045.1at 4784.879 kb on + strand, within Xcc-8004.5045.1at 4784.880 kb on - strand, within Xcc-8004.5045.1at 4784.880 kb on - strand, within Xcc-8004.5045.1at 4784.900 kb on + strand, within Xcc-8004.5045.1at 4784.900 kb on + strand, within Xcc-8004.5045.1at 4784.953 kb on + strand, within Xcc-8004.5045.1at 4784.953 kb on + strand, within Xcc-8004.5045.1at 4784.954 kb on - strand, within Xcc-8004.5045.1at 4784.965 kb on + strand, within Xcc-8004.5045.1at 4784.965 kb on + strand, within Xcc-8004.5045.1at 4785.084 kb on - strand, within Xcc-8004.5045.1at 4785.084 kb on - strand, within Xcc-8004.5045.1at 4785.084 kb on - strand, within Xcc-8004.5045.1at 4785.112 kb on + strand, within Xcc-8004.5045.1at 4785.112 kb on + strand, within Xcc-8004.5045.1at 4785.113 kb on - strand, within Xcc-8004.5045.1at 4785.113 kb on - strand, within Xcc-8004.5045.1at 4785.113 kb on - strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.119 kb on + strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1at 4785.120 kb on - strand, within Xcc-8004.5045.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,782,247 + Xcc-8004.5041.1 0.78 +0.1
4,782,270 + Xcc-8004.5041.1 0.82 -1.1
4,782,271 - Xcc-8004.5041.1 0.82 -0.6
4,782,271 - Xcc-8004.5041.1 0.82 -2.9
4,782,297 + Xcc-8004.5041.1 0.87 -1.1
4,782,561 + +0.5
4,782,561 + +0.9
4,782,562 - -2.4
4,782,562 - -0.4
4,782,725 + +0.9
4,782,725 + -0.1
4,782,726 - -0.1
4,782,867 - +0.9
4,782,867 - -3.2
4,782,875 + +0.2
4,782,876 - +0.9
4,782,876 - -0.0
4,783,126 + +1.1
4,783,126 + +0.4
4,783,126 + +0.9
4,783,126 + -0.0
4,783,126 + +1.1
4,783,126 + +1.3
4,783,127 - +0.6
4,783,127 - -2.5
4,783,127 - -1.0
4,783,127 - -0.4
4,783,127 - -0.1
4,783,127 - +0.5
4,783,127 - -0.9
4,783,127 - -0.4
4,783,179 + -0.2
4,783,180 - +0.2
4,783,184 + -0.9
4,783,184 + +0.7
4,783,184 + +0.9
4,783,184 + +1.0
4,783,184 + -2.6
4,783,184 + +1.7
4,783,185 - -0.3
4,783,185 - +0.3
4,783,185 - -1.4
4,783,185 - +1.0
4,783,185 - -0.1
4,783,185 - +1.6
4,783,185 - +0.0
4,783,379 + Xcc-8004.5044.1 0.18 +0.5
4,783,379 + Xcc-8004.5044.1 0.18 +1.3
4,783,380 - Xcc-8004.5044.1 0.18 +0.1
4,783,380 - Xcc-8004.5044.1 0.18 +0.2
4,783,469 + Xcc-8004.5044.1 0.27 -0.8
4,783,497 + Xcc-8004.5044.1 0.29 +0.7
4,783,498 - Xcc-8004.5044.1 0.29 +0.6
4,783,715 + Xcc-8004.5044.1 0.51 +0.7
4,783,715 + Xcc-8004.5044.1 0.51 +1.4
4,783,715 + Xcc-8004.5044.1 0.51 -0.4
4,783,716 - Xcc-8004.5044.1 0.51 -0.1
4,783,716 - Xcc-8004.5044.1 0.51 -1.1
4,783,716 - Xcc-8004.5044.1 0.51 +0.9
4,783,785 + Xcc-8004.5044.1 0.58 -0.6
4,783,785 + Xcc-8004.5044.1 0.58 +1.2
4,783,786 - Xcc-8004.5044.1 0.58 -0.8
4,784,202 + +1.4
4,784,202 + -0.5
4,784,203 - -1.8
4,784,203 - +0.8
4,784,203 - +0.8
4,784,203 - -0.1
4,784,212 - +1.4
4,784,212 - +0.4
4,784,385 - -1.5
4,784,497 + -2.6
4,784,497 + +0.7
4,784,497 + +0.6
4,784,497 + -1.3
4,784,497 + +2.2
4,784,497 + -0.6
4,784,497 + +0.0
4,784,497 + -2.4
4,784,497 + +1.4
4,784,498 - -1.6
4,784,498 - -0.5
4,784,498 - -0.3
4,784,498 - -0.9
4,784,593 + Xcc-8004.5045.1 0.14 -1.4
4,784,595 + Xcc-8004.5045.1 0.14 -0.5
4,784,662 + Xcc-8004.5045.1 0.19 -0.0
4,784,663 - Xcc-8004.5045.1 0.19 +1.6
4,784,663 - Xcc-8004.5045.1 0.19 +0.0
4,784,690 - Xcc-8004.5045.1 0.21 +0.5
4,784,779 + Xcc-8004.5045.1 0.26 +1.0
4,784,779 + Xcc-8004.5045.1 0.26 +0.7
4,784,780 - Xcc-8004.5045.1 0.26 -0.2
4,784,839 + Xcc-8004.5045.1 0.30 -0.8
4,784,839 + Xcc-8004.5045.1 0.30 -0.6
4,784,839 + Xcc-8004.5045.1 0.30 +0.4
4,784,839 + Xcc-8004.5045.1 0.30 +1.3
4,784,839 + Xcc-8004.5045.1 0.30 -0.5
4,784,839 + Xcc-8004.5045.1 0.30 -0.1
4,784,839 + Xcc-8004.5045.1 0.30 +1.1
4,784,839 + Xcc-8004.5045.1 0.30 +1.2
4,784,840 - Xcc-8004.5045.1 0.30 +1.0
4,784,840 - Xcc-8004.5045.1 0.30 -0.5
4,784,840 - Xcc-8004.5045.1 0.30 +0.4
4,784,840 - Xcc-8004.5045.1 0.30 -0.8
4,784,840 - Xcc-8004.5045.1 0.30 -2.5
4,784,840 - Xcc-8004.5045.1 0.30 -0.3
4,784,840 - Xcc-8004.5045.1 0.30 +0.2
4,784,879 + Xcc-8004.5045.1 0.33 +0.4
4,784,879 + Xcc-8004.5045.1 0.33 +1.0
4,784,880 - Xcc-8004.5045.1 0.33 -2.8
4,784,880 - Xcc-8004.5045.1 0.33 +0.0
4,784,900 + Xcc-8004.5045.1 0.34 +0.3
4,784,900 + Xcc-8004.5045.1 0.34 +0.6
4,784,953 + Xcc-8004.5045.1 0.37 +0.6
4,784,953 + Xcc-8004.5045.1 0.37 -1.1
4,784,954 - Xcc-8004.5045.1 0.37 -0.9
4,784,965 + Xcc-8004.5045.1 0.38 +0.7
4,784,965 + Xcc-8004.5045.1 0.38 +0.6
4,785,084 - Xcc-8004.5045.1 0.46 +0.5
4,785,084 - Xcc-8004.5045.1 0.46 -0.6
4,785,084 - Xcc-8004.5045.1 0.46 -0.9
4,785,112 + Xcc-8004.5045.1 0.48 +0.1
4,785,112 + Xcc-8004.5045.1 0.48 +0.7
4,785,113 - Xcc-8004.5045.1 0.48 +0.2
4,785,113 - Xcc-8004.5045.1 0.48 +0.3
4,785,113 - Xcc-8004.5045.1 0.48 +0.2
4,785,119 + Xcc-8004.5045.1 0.48 -0.3
4,785,119 + Xcc-8004.5045.1 0.48 -0.0
4,785,119 + Xcc-8004.5045.1 0.48 +1.0
4,785,119 + Xcc-8004.5045.1 0.48 -1.4
4,785,119 + Xcc-8004.5045.1 0.48 -1.3
4,785,120 - Xcc-8004.5045.1 0.48 +1.0
4,785,120 - Xcc-8004.5045.1 0.48 -0.2
4,785,120 - Xcc-8004.5045.1 0.48 +0.1
4,785,120 - Xcc-8004.5045.1 0.48 -2.7
4,785,120 - Xcc-8004.5045.1 0.48 -0.5

Or see this region's nucleotide sequence