Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3688.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3686.1 and Xcc-8004.3687.1 overlap by 1 nucleotidesXcc-8004.3687.1 and Xcc-8004.3688.1 overlap by 4 nucleotidesXcc-8004.3688.1 and Xcc-8004.3689.1 are separated by 15 nucleotides Xcc-8004.3686.1: Xcc-8004.3686.1 - 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4), at 3,564,693 to 3,565,865 Xcc-8004.3686.1 Xcc-8004.3687.1: Xcc-8004.3687.1 - Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17), at 3,565,865 to 3,566,662 Xcc-8004.3687.1 Xcc-8004.3688.1: Xcc-8004.3688.1 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12), at 3,566,659 to 3,567,840 Xcc-8004.3688.1 Xcc-8004.3689.1: Xcc-8004.3689.1 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 3,567,856 to 3,569,361 Xcc-8004.3689.1 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3565.713 kb on + strand, within Xcc-8004.3686.1at 3565.713 kb on + strand, within Xcc-8004.3686.1at 3565.714 kb on - strand, within Xcc-8004.3686.1at 3565.714 kb on - strand, within Xcc-8004.3686.1at 3566.190 kb on - strand, within Xcc-8004.3687.1at 3566.328 kb on + strand, within Xcc-8004.3687.1at 3566.329 kb on - strand, within Xcc-8004.3687.1at 3566.499 kb on + strand, within Xcc-8004.3687.1at 3566.499 kb on + strand, within Xcc-8004.3687.1at 3566.499 kb on + strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.569 kb on + strand, within Xcc-8004.3687.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.795 kb on + strand, within Xcc-8004.3688.1at 3566.795 kb on + strand, within Xcc-8004.3688.1at 3566.795 kb on + strand, within Xcc-8004.3688.1at 3567.029 kb on + strand, within Xcc-8004.3688.1at 3567.030 kb on - strand, within Xcc-8004.3688.1at 3567.237 kb on - strand, within Xcc-8004.3688.1at 3567.237 kb on - strand, within Xcc-8004.3688.1at 3567.374 kb on + strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.450 kb on - strand, within Xcc-8004.3688.1at 3567.450 kb on - strand, within Xcc-8004.3688.1at 3567.515 kb on + strand, within Xcc-8004.3688.1at 3567.515 kb on + strand, within Xcc-8004.3688.1at 3567.516 kb on - strand, within Xcc-8004.3688.1at 3567.516 kb on - strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.654 kb on - strand, within Xcc-8004.3688.1at 3567.654 kb on - strand, within Xcc-8004.3688.1at 3567.852 kb on - strandat 3567.852 kb on - strandat 3567.857 kb on + strandat 3567.857 kb on + strandat 3567.857 kb on + strandat 3567.857 kb on + strandat 3567.857 kb on + strandat 3567.857 kb on + strandat 3567.858 kb on - strandat 3567.858 kb on - strandat 3567.858 kb on - strandat 3567.858 kb on - strandat 3567.858 kb on - strandat 3567.858 kb on - strandat 3567.858 kb on - strandat 3567.858 kb on - strandat 3567.941 kb on + strandat 3567.941 kb on + strandat 3567.941 kb on + strandat 3567.942 kb on - strandat 3567.942 kb on - strandat 3568.068 kb on + strand, within Xcc-8004.3689.1at 3568.107 kb on + strand, within Xcc-8004.3689.1at 3568.108 kb on - strand, within Xcc-8004.3689.1at 3568.217 kb on + strand, within Xcc-8004.3689.1at 3568.218 kb on - strand, within Xcc-8004.3689.1at 3568.218 kb on - strand, within Xcc-8004.3689.1at 3568.650 kb on - strand, within Xcc-8004.3689.1at 3568.650 kb on - strand, within Xcc-8004.3689.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,565,713 + Xcc-8004.3686.1 0.87 -0.7
3,565,713 + Xcc-8004.3686.1 0.87 -0.4
3,565,714 - Xcc-8004.3686.1 0.87 -0.5
3,565,714 - Xcc-8004.3686.1 0.87 +1.2
3,566,190 - Xcc-8004.3687.1 0.41 -0.1
3,566,328 + Xcc-8004.3687.1 0.58 +0.8
3,566,329 - Xcc-8004.3687.1 0.58 -0.5
3,566,499 + Xcc-8004.3687.1 0.79 -0.8
3,566,499 + Xcc-8004.3687.1 0.79 -0.9
3,566,499 + Xcc-8004.3687.1 0.79 -1.3
3,566,500 - Xcc-8004.3687.1 0.80 -1.1
3,566,500 - Xcc-8004.3687.1 0.80 -0.5
3,566,500 - Xcc-8004.3687.1 0.80 -1.9
3,566,500 - Xcc-8004.3687.1 0.80 -2.0
3,566,500 - Xcc-8004.3687.1 0.80 +1.2
3,566,500 - Xcc-8004.3687.1 0.80 -1.0
3,566,569 + Xcc-8004.3687.1 0.88 -1.1
3,566,789 + Xcc-8004.3688.1 0.11 +0.8
3,566,789 + Xcc-8004.3688.1 0.11 -0.5
3,566,789 + Xcc-8004.3688.1 0.11 -0.8
3,566,789 + Xcc-8004.3688.1 0.11 -2.0
3,566,789 + Xcc-8004.3688.1 0.11 -0.6
3,566,790 - Xcc-8004.3688.1 0.11 -0.2
3,566,790 - Xcc-8004.3688.1 0.11 +1.3
3,566,790 - Xcc-8004.3688.1 0.11 -1.0
3,566,790 - Xcc-8004.3688.1 0.11 -1.1
3,566,790 - Xcc-8004.3688.1 0.11 -2.2
3,566,790 - Xcc-8004.3688.1 0.11 -2.3
3,566,790 - Xcc-8004.3688.1 0.11 +0.7
3,566,790 - Xcc-8004.3688.1 0.11 +0.3
3,566,795 + Xcc-8004.3688.1 0.12 -0.8
3,566,795 + Xcc-8004.3688.1 0.12 -1.6
3,566,795 + Xcc-8004.3688.1 0.12 +1.2
3,567,029 + Xcc-8004.3688.1 0.31 -1.9
3,567,030 - Xcc-8004.3688.1 0.31 -2.8
3,567,237 - Xcc-8004.3688.1 0.49 -0.8
3,567,237 - Xcc-8004.3688.1 0.49 -1.6
3,567,374 + Xcc-8004.3688.1 0.60 -0.9
3,567,375 - Xcc-8004.3688.1 0.61 -0.5
3,567,375 - Xcc-8004.3688.1 0.61 -1.2
3,567,375 - Xcc-8004.3688.1 0.61 +2.2
3,567,375 - Xcc-8004.3688.1 0.61 -1.0
3,567,375 - Xcc-8004.3688.1 0.61 +0.5
3,567,450 - Xcc-8004.3688.1 0.67 +0.5
3,567,450 - Xcc-8004.3688.1 0.67 -0.6
3,567,515 + Xcc-8004.3688.1 0.72 +0.1
3,567,515 + Xcc-8004.3688.1 0.72 +0.3
3,567,516 - Xcc-8004.3688.1 0.73 +0.4
3,567,516 - Xcc-8004.3688.1 0.73 -1.2
3,567,653 + Xcc-8004.3688.1 0.84 +2.5
3,567,653 + Xcc-8004.3688.1 0.84 -1.0
3,567,653 + Xcc-8004.3688.1 0.84 +0.1
3,567,653 + Xcc-8004.3688.1 0.84 +0.1
3,567,654 - Xcc-8004.3688.1 0.84 -0.3
3,567,654 - Xcc-8004.3688.1 0.84 +0.6
3,567,852 - +0.7
3,567,852 - +0.7
3,567,857 + -0.3
3,567,857 + +0.1
3,567,857 + -0.4
3,567,857 + -2.1
3,567,857 + -0.9
3,567,857 + +0.0
3,567,858 - +0.3
3,567,858 - -3.1
3,567,858 - -1.4
3,567,858 - +1.3
3,567,858 - +2.1
3,567,858 - -0.7
3,567,858 - -1.2
3,567,858 - -0.5
3,567,941 + -2.3
3,567,941 + -0.7
3,567,941 + -1.0
3,567,942 - -2.2
3,567,942 - -1.1
3,568,068 + Xcc-8004.3689.1 0.14 -1.3
3,568,107 + Xcc-8004.3689.1 0.17 -0.4
3,568,108 - Xcc-8004.3689.1 0.17 -0.2
3,568,217 + Xcc-8004.3689.1 0.24 +0.2
3,568,218 - Xcc-8004.3689.1 0.24 +0.5
3,568,218 - Xcc-8004.3689.1 0.24 -1.3
3,568,650 - Xcc-8004.3689.1 0.53 -0.5
3,568,650 - Xcc-8004.3689.1 0.53 +0.6

Or see this region's nucleotide sequence