Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2368.1 and Xcc-8004.2369.1 overlap by 4 nucleotides Xcc-8004.2369.1 and Xcc-8004.2370.1 overlap by 4 nucleotides Xcc-8004.2370.1 and Xcc-8004.2371.1 overlap by 4 nucleotides
Xcc-8004.2368.1: Xcc-8004.2368.1 - N-Acetyl-D-glucosamine ABC transport system, permease protein 1, at 2,311,478 to 2,312,362
Xcc-8004.2368.1
Xcc-8004.2369.1: Xcc-8004.2369.1 - Sugar ABC transporter, sugar permease protein 2 USSDB1D, at 2,312,359 to 2,313,195
Xcc-8004.2369.1
Xcc-8004.2370.1: Xcc-8004.2370.1 - Hypothetical protein USSDB1E, at 2,313,192 to 2,316,356
Xcc-8004.2370.1
Xcc-8004.2371.1: Xcc-8004.2371.1 - putative secreted protein, at 2,316,353 to 2,317,291
Xcc-8004.2371.1
Position (kb) 2313
2314
2315
2316
2317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.228 kb on + strand, within Xcc-8004.2368.1 at 2312.229 kb on - strand, within Xcc-8004.2368.1 at 2312.358 kb on + strand at 2312.358 kb on + strand at 2312.359 kb on - strand at 2312.359 kb on - strand at 2312.359 kb on - strand at 2312.359 kb on - strand at 2312.539 kb on + strand, within Xcc-8004.2369.1 at 2312.539 kb on + strand, within Xcc-8004.2369.1 at 2312.540 kb on - strand, within Xcc-8004.2369.1 at 2312.823 kb on + strand, within Xcc-8004.2369.1 at 2312.842 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.031 kb on + strand, within Xcc-8004.2369.1 at 2313.032 kb on - strand, within Xcc-8004.2369.1 at 2313.032 kb on - strand, within Xcc-8004.2369.1 at 2313.032 kb on - strand, within Xcc-8004.2369.1 at 2313.032 kb on - strand, within Xcc-8004.2369.1 at 2313.032 kb on - strand, within Xcc-8004.2369.1 at 2313.032 kb on - strand, within Xcc-8004.2369.1 at 2313.032 kb on - strand, within Xcc-8004.2369.1 at 2313.131 kb on + strand at 2313.131 kb on + strand at 2313.131 kb on + strand at 2313.131 kb on + strand at 2313.131 kb on + strand at 2313.131 kb on + strand at 2313.132 kb on - strand at 2313.132 kb on - strand at 2313.154 kb on + strand at 2313.154 kb on + strand at 2313.157 kb on + strand at 2313.157 kb on + strand at 2313.158 kb on - strand at 2313.158 kb on - strand at 2313.158 kb on - strand at 2313.158 kb on - strand at 2313.158 kb on - strand at 2313.158 kb on - strand at 2313.158 kb on - strand at 2313.382 kb on - strand at 2313.382 kb on - strand at 2313.382 kb on - strand at 2313.382 kb on - strand at 2313.405 kb on + strand at 2313.405 kb on + strand at 2313.405 kb on + strand at 2313.406 kb on - strand at 2313.406 kb on - strand at 2313.406 kb on - strand at 2313.450 kb on + strand at 2313.450 kb on + strand at 2313.451 kb on - strand at 2313.451 kb on - strand at 2313.451 kb on - strand at 2313.588 kb on + strand, within Xcc-8004.2370.1 at 2313.672 kb on + strand, within Xcc-8004.2370.1 at 2313.672 kb on + strand, within Xcc-8004.2370.1 at 2313.672 kb on + strand, within Xcc-8004.2370.1 at 2313.673 kb on - strand, within Xcc-8004.2370.1 at 2313.673 kb on - strand, within Xcc-8004.2370.1 at 2313.673 kb on - strand, within Xcc-8004.2370.1 at 2313.673 kb on - strand, within Xcc-8004.2370.1 at 2313.673 kb on - strand, within Xcc-8004.2370.1 at 2313.673 kb on - strand, within Xcc-8004.2370.1 at 2313.936 kb on + strand, within Xcc-8004.2370.1 at 2313.937 kb on - strand, within Xcc-8004.2370.1 at 2313.937 kb on - strand, within Xcc-8004.2370.1 at 2313.965 kb on + strand, within Xcc-8004.2370.1 at 2313.965 kb on + strand, within Xcc-8004.2370.1 at 2314.044 kb on + strand, within Xcc-8004.2370.1 at 2314.045 kb on - strand, within Xcc-8004.2370.1 at 2314.209 kb on + strand, within Xcc-8004.2370.1 at 2314.210 kb on - strand, within Xcc-8004.2370.1 at 2314.377 kb on + strand, within Xcc-8004.2370.1 at 2314.377 kb on + strand, within Xcc-8004.2370.1 at 2314.378 kb on - strand, within Xcc-8004.2370.1 at 2314.378 kb on - strand, within Xcc-8004.2370.1 at 2314.378 kb on - strand, within Xcc-8004.2370.1 at 2314.378 kb on - strand, within Xcc-8004.2370.1 at 2314.493 kb on + strand, within Xcc-8004.2370.1 at 2314.977 kb on - strand, within Xcc-8004.2370.1 at 2315.049 kb on + strand, within Xcc-8004.2370.1 at 2315.049 kb on + strand, within Xcc-8004.2370.1 at 2315.130 kb on + strand, within Xcc-8004.2370.1 at 2315.130 kb on + strand, within Xcc-8004.2370.1 at 2315.131 kb on - strand, within Xcc-8004.2370.1 at 2315.256 kb on + strand, within Xcc-8004.2370.1 at 2315.257 kb on - strand, within Xcc-8004.2370.1 at 2315.257 kb on - strand, within Xcc-8004.2370.1 at 2315.257 kb on - strand, within Xcc-8004.2370.1 at 2315.259 kb on + strand, within Xcc-8004.2370.1 at 2315.259 kb on + strand, within Xcc-8004.2370.1 at 2315.260 kb on - strand, within Xcc-8004.2370.1 at 2315.260 kb on - strand, within Xcc-8004.2370.1 at 2315.319 kb on + strand, within Xcc-8004.2370.1 at 2315.320 kb on - strand, within Xcc-8004.2370.1 at 2315.325 kb on + strand, within Xcc-8004.2370.1 at 2315.325 kb on + strand, within Xcc-8004.2370.1 at 2315.325 kb on + strand, within Xcc-8004.2370.1 at 2315.325 kb on + strand, within Xcc-8004.2370.1 at 2315.326 kb on - strand, within Xcc-8004.2370.1 at 2315.326 kb on - strand, within Xcc-8004.2370.1 at 2315.326 kb on - strand, within Xcc-8004.2370.1 at 2315.326 kb on - strand, within Xcc-8004.2370.1 at 2315.326 kb on - strand, within Xcc-8004.2370.1 at 2315.326 kb on - strand, within Xcc-8004.2370.1 at 2315.326 kb on - strand, within Xcc-8004.2370.1 at 2315.375 kb on + strand, within Xcc-8004.2370.1 at 2315.388 kb on + strand, within Xcc-8004.2370.1 at 2315.388 kb on + strand, within Xcc-8004.2370.1 at 2315.389 kb on - strand, within Xcc-8004.2370.1 at 2315.425 kb on - strand, within Xcc-8004.2370.1 at 2315.449 kb on - strand, within Xcc-8004.2370.1 at 2315.478 kb on + strand, within Xcc-8004.2370.1 at 2315.479 kb on - strand, within Xcc-8004.2370.1 at 2315.784 kb on + strand, within Xcc-8004.2370.1 at 2315.784 kb on + strand, within Xcc-8004.2370.1 at 2315.784 kb on + strand, within Xcc-8004.2370.1 at 2315.784 kb on + strand, within Xcc-8004.2370.1 at 2315.784 kb on + strand, within Xcc-8004.2370.1 at 2315.785 kb on - strand, within Xcc-8004.2370.1 at 2315.793 kb on + strand, within Xcc-8004.2370.1 at 2315.794 kb on - strand, within Xcc-8004.2370.1 at 2315.794 kb on - strand, within Xcc-8004.2370.1 at 2315.953 kb on + strand, within Xcc-8004.2370.1 at 2315.954 kb on - strand, within Xcc-8004.2370.1 at 2316.010 kb on - strand, within Xcc-8004.2370.1 at 2316.010 kb on - strand, within Xcc-8004.2370.1 at 2316.123 kb on + strand at 2316.123 kb on + strand at 2316.124 kb on - strand at 2316.124 kb on - strand at 2316.124 kb on - strand at 2316.124 kb on - strand at 2316.213 kb on + strand at 2316.590 kb on + strand, within Xcc-8004.2371.1 at 2316.590 kb on + strand, within Xcc-8004.2371.1 at 2316.590 kb on + strand, within Xcc-8004.2371.1 at 2316.590 kb on + strand, within Xcc-8004.2371.1 at 2316.590 kb on + strand, within Xcc-8004.2371.1 at 2316.591 kb on - strand, within Xcc-8004.2371.1 at 2316.591 kb on - strand, within Xcc-8004.2371.1 at 2316.591 kb on - strand, within Xcc-8004.2371.1 at 2316.591 kb on - strand, within Xcc-8004.2371.1 at 2316.710 kb on + strand, within Xcc-8004.2371.1 at 2316.710 kb on + strand, within Xcc-8004.2371.1 at 2316.710 kb on + strand, within Xcc-8004.2371.1 at 2316.710 kb on + strand, within Xcc-8004.2371.1 at 2316.752 kb on + strand, within Xcc-8004.2371.1 at 2316.853 kb on + strand, within Xcc-8004.2371.1 at 2316.853 kb on + strand, within Xcc-8004.2371.1 at 2316.854 kb on - strand, within Xcc-8004.2371.1 at 2316.854 kb on - strand, within Xcc-8004.2371.1 at 2316.878 kb on + strand, within Xcc-8004.2371.1 at 2316.879 kb on - strand, within Xcc-8004.2371.1 at 2316.879 kb on - strand, within Xcc-8004.2371.1 at 2317.041 kb on + strand, within Xcc-8004.2371.1 at 2317.041 kb on + strand, within Xcc-8004.2371.1 at 2317.052 kb on + strand, within Xcc-8004.2371.1 at 2317.053 kb on - strand, within Xcc-8004.2371.1 at 2317.053 kb on - strand, within Xcc-8004.2371.1 at 2317.064 kb on + strand, within Xcc-8004.2371.1 at 2317.064 kb on + strand, within Xcc-8004.2371.1 at 2317.064 kb on + strand, within Xcc-8004.2371.1 at 2317.064 kb on + strand, within Xcc-8004.2371.1 at 2317.064 kb on + strand, within Xcc-8004.2371.1 at 2317.064 kb on + strand, within Xcc-8004.2371.1 at 2317.064 kb on + strand, within Xcc-8004.2371.1 at 2317.065 kb on - strand, within Xcc-8004.2371.1 at 2317.065 kb on - strand, within Xcc-8004.2371.1 at 2317.208 kb on + strand at 2317.252 kb on - strand at 2317.307 kb on + strand at 2317.315 kb on + strand at 2317.315 kb on + strand at 2317.315 kb on + strand at 2317.315 kb on + strand at 2317.315 kb on + strand at 2317.316 kb on - strand at 2317.316 kb on - strand at 2317.316 kb on - strand at 2317.316 kb on - strand at 2317.338 kb on + strand at 2317.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 2,312,228 + Xcc-8004.2368.1 0.85 +0.3 2,312,228 + Xcc-8004.2368.1 0.85 +0.1 2,312,228 + Xcc-8004.2368.1 0.85 +0.2 2,312,228 + Xcc-8004.2368.1 0.85 +0.4 2,312,228 + Xcc-8004.2368.1 0.85 +2.6 2,312,228 + Xcc-8004.2368.1 0.85 +0.1 2,312,228 + Xcc-8004.2368.1 0.85 +0.7 2,312,228 + Xcc-8004.2368.1 0.85 -0.1 2,312,229 - Xcc-8004.2368.1 0.85 +0.7 2,312,358 + -0.7 2,312,358 + +0.2 2,312,359 - +1.2 2,312,359 - -0.4 2,312,359 - -1.4 2,312,359 - -0.8 2,312,539 + Xcc-8004.2369.1 0.22 -0.8 2,312,539 + Xcc-8004.2369.1 0.22 +0.1 2,312,540 - Xcc-8004.2369.1 0.22 +1.0 2,312,823 + Xcc-8004.2369.1 0.55 +1.1 2,312,842 + Xcc-8004.2369.1 0.58 -1.1 2,313,031 + Xcc-8004.2369.1 0.80 -0.8 2,313,031 + Xcc-8004.2369.1 0.80 -0.9 2,313,031 + Xcc-8004.2369.1 0.80 -0.8 2,313,031 + Xcc-8004.2369.1 0.80 +1.9 2,313,031 + Xcc-8004.2369.1 0.80 -1.0 2,313,031 + Xcc-8004.2369.1 0.80 -0.7 2,313,031 + Xcc-8004.2369.1 0.80 -0.7 2,313,031 + Xcc-8004.2369.1 0.80 -0.2 2,313,032 - Xcc-8004.2369.1 0.80 +1.8 2,313,032 - Xcc-8004.2369.1 0.80 -0.6 2,313,032 - Xcc-8004.2369.1 0.80 -0.0 2,313,032 - Xcc-8004.2369.1 0.80 -1.6 2,313,032 - Xcc-8004.2369.1 0.80 +0.3 2,313,032 - Xcc-8004.2369.1 0.80 +0.3 2,313,032 - Xcc-8004.2369.1 0.80 -0.4 2,313,131 + +1.9 2,313,131 + +0.8 2,313,131 + -0.0 2,313,131 + -0.7 2,313,131 + +0.2 2,313,131 + +1.0 2,313,132 - -0.3 2,313,132 - -0.0 2,313,154 + +0.0 2,313,154 + +0.6 2,313,157 + -0.5 2,313,157 + -1.2 2,313,158 - -1.8 2,313,158 - +1.4 2,313,158 - -1.2 2,313,158 - +0.0 2,313,158 - +1.1 2,313,158 - -0.5 2,313,158 - +2.8 2,313,382 - -0.4 2,313,382 - -0.6 2,313,382 - +0.8 2,313,382 - -0.1 2,313,405 + -0.2 2,313,405 + -1.4 2,313,405 + +0.4 2,313,406 - -1.1 2,313,406 - +1.5 2,313,406 - +0.7 2,313,450 + +0.8 2,313,450 + +0.2 2,313,451 - +0.8 2,313,451 - -0.6 2,313,451 - +0.2 2,313,588 + Xcc-8004.2370.1 0.13 -0.1 2,313,672 + Xcc-8004.2370.1 0.15 +0.9 2,313,672 + Xcc-8004.2370.1 0.15 -0.2 2,313,672 + Xcc-8004.2370.1 0.15 -0.4 2,313,673 - Xcc-8004.2370.1 0.15 +0.0 2,313,673 - Xcc-8004.2370.1 0.15 -1.4 2,313,673 - Xcc-8004.2370.1 0.15 -1.3 2,313,673 - Xcc-8004.2370.1 0.15 +0.3 2,313,673 - Xcc-8004.2370.1 0.15 -0.5 2,313,673 - Xcc-8004.2370.1 0.15 -0.3 2,313,936 + Xcc-8004.2370.1 0.24 -0.1 2,313,937 - Xcc-8004.2370.1 0.24 +1.4 2,313,937 - Xcc-8004.2370.1 0.24 +1.1 2,313,965 + Xcc-8004.2370.1 0.24 -0.7 2,313,965 + Xcc-8004.2370.1 0.24 -0.2 2,314,044 + Xcc-8004.2370.1 0.27 +1.6 2,314,045 - Xcc-8004.2370.1 0.27 -0.1 2,314,209 + Xcc-8004.2370.1 0.32 +1.6 2,314,210 - Xcc-8004.2370.1 0.32 -1.4 2,314,377 + Xcc-8004.2370.1 0.37 +1.2 2,314,377 + Xcc-8004.2370.1 0.37 -1.3 2,314,378 - Xcc-8004.2370.1 0.37 +0.9 2,314,378 - Xcc-8004.2370.1 0.37 -0.7 2,314,378 - Xcc-8004.2370.1 0.37 -1.6 2,314,378 - Xcc-8004.2370.1 0.37 +1.2 2,314,493 + Xcc-8004.2370.1 0.41 +0.2 2,314,977 - Xcc-8004.2370.1 0.56 -0.4 2,315,049 + Xcc-8004.2370.1 0.59 +0.7 2,315,049 + Xcc-8004.2370.1 0.59 +1.2 2,315,130 + Xcc-8004.2370.1 0.61 +1.7 2,315,130 + Xcc-8004.2370.1 0.61 -0.7 2,315,131 - Xcc-8004.2370.1 0.61 -1.5 2,315,256 + Xcc-8004.2370.1 0.65 +1.0 2,315,257 - Xcc-8004.2370.1 0.65 +1.1 2,315,257 - Xcc-8004.2370.1 0.65 -1.3 2,315,257 - Xcc-8004.2370.1 0.65 -1.2 2,315,259 + Xcc-8004.2370.1 0.65 +1.4 2,315,259 + Xcc-8004.2370.1 0.65 -0.1 2,315,260 - Xcc-8004.2370.1 0.65 -0.0 2,315,260 - Xcc-8004.2370.1 0.65 +0.8 2,315,319 + Xcc-8004.2370.1 0.67 +0.8 2,315,320 - Xcc-8004.2370.1 0.67 -2.1 2,315,325 + Xcc-8004.2370.1 0.67 +0.0 2,315,325 + Xcc-8004.2370.1 0.67 -0.2 2,315,325 + Xcc-8004.2370.1 0.67 +0.7 2,315,325 + Xcc-8004.2370.1 0.67 +1.0 2,315,326 - Xcc-8004.2370.1 0.67 +0.5 2,315,326 - Xcc-8004.2370.1 0.67 +0.2 2,315,326 - Xcc-8004.2370.1 0.67 +1.1 2,315,326 - Xcc-8004.2370.1 0.67 -1.2 2,315,326 - Xcc-8004.2370.1 0.67 +0.4 2,315,326 - Xcc-8004.2370.1 0.67 -0.2 2,315,326 - Xcc-8004.2370.1 0.67 +0.7 2,315,375 + Xcc-8004.2370.1 0.69 +0.8 2,315,388 + Xcc-8004.2370.1 0.69 -1.8 2,315,388 + Xcc-8004.2370.1 0.69 +1.0 2,315,389 - Xcc-8004.2370.1 0.69 +1.5 2,315,425 - Xcc-8004.2370.1 0.71 +0.7 2,315,449 - Xcc-8004.2370.1 0.71 +0.5 2,315,478 + Xcc-8004.2370.1 0.72 +1.6 2,315,479 - Xcc-8004.2370.1 0.72 +0.6 2,315,784 + Xcc-8004.2370.1 0.82 -0.1 2,315,784 + Xcc-8004.2370.1 0.82 -0.6 2,315,784 + Xcc-8004.2370.1 0.82 -1.2 2,315,784 + Xcc-8004.2370.1 0.82 +0.8 2,315,784 + Xcc-8004.2370.1 0.82 -1.5 2,315,785 - Xcc-8004.2370.1 0.82 -0.3 2,315,793 + Xcc-8004.2370.1 0.82 +1.6 2,315,794 - Xcc-8004.2370.1 0.82 -1.2 2,315,794 - Xcc-8004.2370.1 0.82 +0.1 2,315,953 + Xcc-8004.2370.1 0.87 +0.9 2,315,954 - Xcc-8004.2370.1 0.87 +0.7 2,316,010 - Xcc-8004.2370.1 0.89 +1.5 2,316,010 - Xcc-8004.2370.1 0.89 +0.6 2,316,123 + -0.5 2,316,123 + -1.5 2,316,124 - -1.1 2,316,124 - -1.5 2,316,124 - -1.0 2,316,124 - -0.8 2,316,213 + -2.1 2,316,590 + Xcc-8004.2371.1 0.25 +0.5 2,316,590 + Xcc-8004.2371.1 0.25 +0.1 2,316,590 + Xcc-8004.2371.1 0.25 +0.7 2,316,590 + Xcc-8004.2371.1 0.25 +0.9 2,316,590 + Xcc-8004.2371.1 0.25 -1.0 2,316,591 - Xcc-8004.2371.1 0.25 +1.7 2,316,591 - Xcc-8004.2371.1 0.25 +0.8 2,316,591 - Xcc-8004.2371.1 0.25 +0.9 2,316,591 - Xcc-8004.2371.1 0.25 -0.3 2,316,710 + Xcc-8004.2371.1 0.38 -1.6 2,316,710 + Xcc-8004.2371.1 0.38 +1.9 2,316,710 + Xcc-8004.2371.1 0.38 -3.2 2,316,710 + Xcc-8004.2371.1 0.38 +0.5 2,316,752 + Xcc-8004.2371.1 0.42 -0.9 2,316,853 + Xcc-8004.2371.1 0.53 -0.8 2,316,853 + Xcc-8004.2371.1 0.53 +0.2 2,316,854 - Xcc-8004.2371.1 0.53 -0.6 2,316,854 - Xcc-8004.2371.1 0.53 -2.5 2,316,878 + Xcc-8004.2371.1 0.56 -0.5 2,316,879 - Xcc-8004.2371.1 0.56 -0.0 2,316,879 - Xcc-8004.2371.1 0.56 -0.7 2,317,041 + Xcc-8004.2371.1 0.73 -0.3 2,317,041 + Xcc-8004.2371.1 0.73 -0.9 2,317,052 + Xcc-8004.2371.1 0.74 -0.9 2,317,053 - Xcc-8004.2371.1 0.75 +0.7 2,317,053 - Xcc-8004.2371.1 0.75 -0.1 2,317,064 + Xcc-8004.2371.1 0.76 +0.5 2,317,064 + Xcc-8004.2371.1 0.76 -0.8 2,317,064 + Xcc-8004.2371.1 0.76 -1.0 2,317,064 + Xcc-8004.2371.1 0.76 +0.7 2,317,064 + Xcc-8004.2371.1 0.76 -0.9 2,317,064 + Xcc-8004.2371.1 0.76 -1.3 2,317,064 + Xcc-8004.2371.1 0.76 -0.5 2,317,065 - Xcc-8004.2371.1 0.76 +1.8 2,317,065 - Xcc-8004.2371.1 0.76 +1.6 2,317,208 + -0.1 2,317,252 - -0.4 2,317,307 + +0.4 2,317,315 + +0.6 2,317,315 + +1.5 2,317,315 + +0.7 2,317,315 + -0.4 2,317,315 + +0.6 2,317,316 - +0.7 2,317,316 - -0.0 2,317,316 - -0.7 2,317,316 - +1.0 2,317,338 + -2.7 2,317,339 - +0.1
Or see this region's nucleotide sequence