Strain Fitness in Marinobacter adhaerens HP15 around HP15_905

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_903 and HP15_904 are separated by 93 nucleotidesHP15_904 and HP15_905 are separated by 103 nucleotidesHP15_905 and HP15_906 are separated by 120 nucleotides HP15_903: HP15_903 - beta-lactamase domain protein, at 915,013 to 915,867 _903 HP15_904: HP15_904 - conserved hypothetical protein, at 915,961 to 916,389 _904 HP15_905: HP15_905 - protein containing helix-turn-helix, AraC domain, at 916,493 to 917,410 _905 HP15_906: HP15_906 - methylmalonate-semialdehyde dehydrogenase, at 917,531 to 919,024 _906 Position (kb) 916 917 918Strain fitness (log2 ratio) -1 0 1at 915.639 kb on - strand, within HP15_903at 915.664 kb on - strand, within HP15_903at 915.758 kb on + strand, within HP15_903at 915.795 kb on - strandat 915.819 kb on - strandat 915.861 kb on + strandat 915.967 kb on - strandat 915.989 kb on - strandat 915.995 kb on + strandat 916.005 kb on + strand, within HP15_904at 916.005 kb on + strand, within HP15_904at 916.013 kb on - strand, within HP15_904at 916.013 kb on - strand, within HP15_904at 916.018 kb on + strand, within HP15_904at 916.026 kb on - strand, within HP15_904at 916.251 kb on - strand, within HP15_904at 916.282 kb on - strand, within HP15_904at 916.422 kb on + strandat 916.422 kb on + strandat 916.422 kb on + strandat 916.430 kb on - strandat 916.430 kb on - strandat 916.477 kb on + strandat 916.485 kb on - strandat 916.517 kb on + strandat 916.525 kb on - strandat 916.607 kb on + strand, within HP15_905at 916.647 kb on + strand, within HP15_905at 916.669 kb on + strand, within HP15_905at 916.688 kb on - strand, within HP15_905at 916.698 kb on - strand, within HP15_905at 916.849 kb on - strand, within HP15_905at 916.898 kb on + strand, within HP15_905at 917.034 kb on + strand, within HP15_905at 917.044 kb on - strand, within HP15_905at 917.048 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.055 kb on + strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.063 kb on - strand, within HP15_905at 917.069 kb on - strand, within HP15_905at 917.097 kb on - strand, within HP15_905at 917.133 kb on + strand, within HP15_905at 917.133 kb on + strand, within HP15_905at 917.136 kb on - strand, within HP15_905at 917.141 kb on - strand, within HP15_905at 917.183 kb on + strand, within HP15_905at 917.239 kb on + strand, within HP15_905at 917.351 kb on + strandat 917.480 kb on + strandat 917.573 kb on + strandat 917.576 kb on - strandat 917.641 kb on - strandat 917.844 kb on + strand, within HP15_906at 917.844 kb on + strand, within HP15_906at 917.852 kb on - strand, within HP15_906at 917.890 kb on - strand, within HP15_906at 917.900 kb on + strand, within HP15_906at 917.921 kb on + strand, within HP15_906at 918.083 kb on - strand, within HP15_906at 918.102 kb on - strand, within HP15_906at 918.120 kb on - strand, within HP15_906at 918.273 kb on - strand, within HP15_906at 918.362 kb on + strand, within HP15_906at 918.407 kb on + strand, within HP15_906

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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915,639 - HP15_903 0.73 -0.2
915,664 - HP15_903 0.76 -0.2
915,758 + HP15_903 0.87 +0.6
915,795 - +0.0
915,819 - +0.3
915,861 + -1.1
915,967 - +0.2
915,989 - -0.2
915,995 + -0.4
916,005 + HP15_904 0.10 -0.1
916,005 + HP15_904 0.10 -0.3
916,013 - HP15_904 0.12 +0.7
916,013 - HP15_904 0.12 +0.3
916,018 + HP15_904 0.13 -0.7
916,026 - HP15_904 0.15 +1.1
916,251 - HP15_904 0.68 +0.5
916,282 - HP15_904 0.75 +0.1
916,422 + -1.6
916,422 + -0.6
916,422 + +0.4
916,430 - -0.1
916,430 - +1.5
916,477 + +0.3
916,485 - +0.8
916,517 + -0.1
916,525 - +0.4
916,607 + HP15_905 0.12 -0.1
916,647 + HP15_905 0.17 +0.6
916,669 + HP15_905 0.19 -0.8
916,688 - HP15_905 0.21 -0.8
916,698 - HP15_905 0.22 -1.0
916,849 - HP15_905 0.39 -0.4
916,898 + HP15_905 0.44 -0.3
917,034 + HP15_905 0.59 +0.1
917,044 - HP15_905 0.60 -0.8
917,048 + HP15_905 0.60 -0.6
917,055 + HP15_905 0.61 -0.4
917,055 + HP15_905 0.61 -0.2
917,055 + HP15_905 0.61 -0.0
917,063 - HP15_905 0.62 -0.6
917,063 - HP15_905 0.62 -1.0
917,063 - HP15_905 0.62 -0.0
917,069 - HP15_905 0.63 -1.7
917,097 - HP15_905 0.66 +0.0
917,133 + HP15_905 0.70 -0.5
917,133 + HP15_905 0.70 +0.1
917,136 - HP15_905 0.70 -1.0
917,141 - HP15_905 0.71 -0.8
917,183 + HP15_905 0.75 +0.8
917,239 + HP15_905 0.81 +0.6
917,351 + -0.5
917,480 + -1.4
917,573 + -1.4
917,576 - -1.0
917,641 - -1.3
917,844 + HP15_906 0.21 -0.4
917,844 + HP15_906 0.21 -0.6
917,852 - HP15_906 0.21 +0.5
917,890 - HP15_906 0.24 -0.8
917,900 + HP15_906 0.25 -0.4
917,921 + HP15_906 0.26 -0.4
918,083 - HP15_906 0.37 -0.5
918,102 - HP15_906 0.38 -1.7
918,120 - HP15_906 0.39 -0.2
918,273 - HP15_906 0.50 -0.6
918,362 + HP15_906 0.56 -0.2
918,407 + HP15_906 0.59 -0.1

Or see this region's nucleotide sequence