Strain Fitness in Marinobacter adhaerens HP15 around HP15_448

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_447 and HP15_448 overlap by 4 nucleotidesHP15_448 and HP15_449 are separated by 47 nucleotides HP15_447: HP15_447 - glycosyltransferase, at 451,273 to 452,388 _447 HP15_448: HP15_448 - protein containing DUF1022, at 452,385 to 453,380 _448 HP15_449: HP15_449 - lipid A biosynthesis lauroyl acyltransferase, at 453,428 to 454,375 _449 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1at 451.424 kb on - strand, within HP15_447at 451.558 kb on - strand, within HP15_447at 451.650 kb on - strand, within HP15_447at 451.673 kb on + strand, within HP15_447at 451.695 kb on + strand, within HP15_447at 451.710 kb on + strand, within HP15_447at 451.718 kb on - strand, within HP15_447at 451.894 kb on + strand, within HP15_447at 451.998 kb on - strand, within HP15_447at 452.020 kb on + strand, within HP15_447at 452.139 kb on - strand, within HP15_447at 452.326 kb on + strandat 452.351 kb on + strandat 453.378 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
remove
451,424 - HP15_447 0.14 -1.7
451,558 - HP15_447 0.26 -1.1
451,650 - HP15_447 0.34 -1.8
451,673 + HP15_447 0.36 -1.9
451,695 + HP15_447 0.38 -1.4
451,710 + HP15_447 0.39 -0.8
451,718 - HP15_447 0.40 -0.0
451,894 + HP15_447 0.56 -1.4
451,998 - HP15_447 0.65 -2.2
452,020 + HP15_447 0.67 -2.2
452,139 - HP15_447 0.78 -1.9
452,326 + -0.5
452,351 + -2.9
453,378 - -0.4

Or see this region's nucleotide sequence