Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g30 and HP15_p42g31 are separated by 13 nucleotides HP15_p42g31 and HP15_p42g32 are separated by 144 nucleotides HP15_p42g32 and HP15_p42g33 overlap by 4 nucleotides HP15_p42g33 and HP15_p42g34 are separated by 20 nucleotides
HP15_p42g30: HP15_p42g30 - YacC protein, at 25,592 to 26,452
_p42g30
HP15_p42g31: HP15_p42g31 - conserved hypothetical protein, secreted, at 26,466 to 26,819
_p42g31
HP15_p42g32: HP15_p42g32 - hypothetical protein, at 26,964 to 27,095
_p42g32
HP15_p42g33: HP15_p42g33 - protein containing resolvase N-terminal domain, at 27,092 to 27,727
_p42g33
HP15_p42g34: HP15_p42g34 - DNA-binding protein, at 27,748 to 28,131
_p42g34
Position (kb) 26
27
28 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 25.985 kb on + strand, within HP15_p42g30 at 26.005 kb on + strand, within HP15_p42g30 at 26.006 kb on - strand, within HP15_p42g30 at 26.006 kb on - strand, within HP15_p42g30 at 26.013 kb on - strand, within HP15_p42g30 at 26.074 kb on + strand, within HP15_p42g30 at 26.137 kb on + strand, within HP15_p42g30 at 26.150 kb on - strand, within HP15_p42g30 at 26.162 kb on - strand, within HP15_p42g30 at 26.183 kb on + strand, within HP15_p42g30 at 26.242 kb on + strand, within HP15_p42g30 at 26.250 kb on - strand, within HP15_p42g30 at 26.290 kb on + strand, within HP15_p42g30 at 26.290 kb on + strand, within HP15_p42g30 at 26.303 kb on + strand, within HP15_p42g30 at 26.337 kb on + strand, within HP15_p42g30 at 26.343 kb on + strand, within HP15_p42g30 at 26.409 kb on + strand at 26.462 kb on - strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.493 kb on - strand at 26.493 kb on - strand at 26.493 kb on - strand at 26.605 kb on + strand, within HP15_p42g31 at 26.607 kb on + strand, within HP15_p42g31 at 26.607 kb on + strand, within HP15_p42g31 at 26.661 kb on - strand, within HP15_p42g31 at 26.662 kb on - strand, within HP15_p42g31 at 26.663 kb on + strand, within HP15_p42g31 at 26.690 kb on + strand, within HP15_p42g31 at 26.698 kb on - strand, within HP15_p42g31 at 26.767 kb on - strand, within HP15_p42g31 at 26.783 kb on + strand, within HP15_p42g31 at 26.791 kb on + strand at 26.791 kb on - strand at 26.994 kb on + strand, within HP15_p42g32 at 27.014 kb on + strand, within HP15_p42g32 at 27.027 kb on - strand, within HP15_p42g32 at 27.133 kb on + strand at 27.179 kb on - strand, within HP15_p42g33 at 27.179 kb on - strand, within HP15_p42g33 at 27.181 kb on - strand, within HP15_p42g33 at 27.192 kb on - strand, within HP15_p42g33 at 27.252 kb on + strand, within HP15_p42g33 at 27.252 kb on + strand, within HP15_p42g33 at 27.260 kb on - strand, within HP15_p42g33 at 27.260 kb on - strand, within HP15_p42g33 at 27.320 kb on - strand, within HP15_p42g33 at 27.330 kb on + strand, within HP15_p42g33 at 27.343 kb on - strand, within HP15_p42g33 at 27.415 kb on + strand, within HP15_p42g33 at 27.457 kb on + strand, within HP15_p42g33 at 27.513 kb on + strand, within HP15_p42g33 at 27.546 kb on + strand, within HP15_p42g33 at 27.546 kb on + strand, within HP15_p42g33 at 27.546 kb on + strand, within HP15_p42g33 at 27.546 kb on + strand, within HP15_p42g33 at 27.554 kb on - strand, within HP15_p42g33 at 27.651 kb on + strand, within HP15_p42g33 at 27.659 kb on - strand, within HP15_p42g33 at 27.745 kb on + strand at 27.879 kb on - strand, within HP15_p42g34 at 27.880 kb on + strand, within HP15_p42g34 at 27.887 kb on + strand, within HP15_p42g34 at 27.887 kb on + strand, within HP15_p42g34 at 27.905 kb on - strand, within HP15_p42g34 at 27.927 kb on + strand, within HP15_p42g34 at 27.962 kb on + strand, within HP15_p42g34 at 27.962 kb on + strand, within HP15_p42g34 at 27.967 kb on + strand, within HP15_p42g34 at 27.970 kb on - strand, within HP15_p42g34 at 27.970 kb on - strand, within HP15_p42g34 at 28.005 kb on - strand, within HP15_p42g34 at 28.012 kb on + strand, within HP15_p42g34 at 28.012 kb on + strand, within HP15_p42g34 at 28.019 kb on + strand, within HP15_p42g34 at 28.019 kb on + strand, within HP15_p42g34 at 28.019 kb on + strand, within HP15_p42g34 at 28.025 kb on + strand, within HP15_p42g34 at 28.027 kb on - strand, within HP15_p42g34 at 28.027 kb on - strand, within HP15_p42g34 at 28.062 kb on - strand, within HP15_p42g34
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 25,985 + HP15_p42g30 0.46 +2.5 26,005 + HP15_p42g30 0.48 -0.3 26,006 - HP15_p42g30 0.48 +0.5 26,006 - HP15_p42g30 0.48 +0.8 26,013 - HP15_p42g30 0.49 +0.6 26,074 + HP15_p42g30 0.56 -0.7 26,137 + HP15_p42g30 0.63 +0.1 26,150 - HP15_p42g30 0.65 -2.5 26,162 - HP15_p42g30 0.66 +0.4 26,183 + HP15_p42g30 0.69 +0.9 26,242 + HP15_p42g30 0.75 +0.5 26,250 - HP15_p42g30 0.76 +0.3 26,290 + HP15_p42g30 0.81 +0.6 26,290 + HP15_p42g30 0.81 -0.0 26,303 + HP15_p42g30 0.83 +1.4 26,337 + HP15_p42g30 0.87 -0.2 26,343 + HP15_p42g30 0.87 -1.1 26,409 + -0.5 26,462 - +0.1 26,485 + -0.3 26,485 + +0.9 26,485 + +0.1 26,485 + +0.5 26,485 + +0.4 26,493 - -0.3 26,493 - -0.3 26,493 - +0.3 26,605 + HP15_p42g31 0.39 -0.1 26,607 + HP15_p42g31 0.40 -0.5 26,607 + HP15_p42g31 0.40 -0.1 26,661 - HP15_p42g31 0.55 -1.1 26,662 - HP15_p42g31 0.55 -0.0 26,663 + HP15_p42g31 0.56 +1.2 26,690 + HP15_p42g31 0.63 -0.4 26,698 - HP15_p42g31 0.66 +1.0 26,767 - HP15_p42g31 0.85 +0.7 26,783 + HP15_p42g31 0.90 +1.5 26,791 + +1.0 26,791 - +0.1 26,994 + HP15_p42g32 0.23 -0.9 27,014 + HP15_p42g32 0.38 +0.0 27,027 - HP15_p42g32 0.48 +0.5 27,133 + -1.3 27,179 - HP15_p42g33 0.14 -1.2 27,179 - HP15_p42g33 0.14 -1.5 27,181 - HP15_p42g33 0.14 -1.6 27,192 - HP15_p42g33 0.16 -3.3 27,252 + HP15_p42g33 0.25 -1.3 27,252 + HP15_p42g33 0.25 -0.7 27,260 - HP15_p42g33 0.26 -1.9 27,260 - HP15_p42g33 0.26 -1.0 27,320 - HP15_p42g33 0.36 -0.8 27,330 + HP15_p42g33 0.37 -4.3 27,343 - HP15_p42g33 0.39 -1.8 27,415 + HP15_p42g33 0.51 -1.2 27,457 + HP15_p42g33 0.57 -2.2 27,513 + HP15_p42g33 0.66 -2.2 27,546 + HP15_p42g33 0.71 -0.1 27,546 + HP15_p42g33 0.71 -1.6 27,546 + HP15_p42g33 0.71 -1.3 27,546 + HP15_p42g33 0.71 -0.4 27,554 - HP15_p42g33 0.73 -1.3 27,651 + HP15_p42g33 0.88 -0.4 27,659 - HP15_p42g33 0.89 -1.3 27,745 + -0.3 27,879 - HP15_p42g34 0.34 -0.0 27,880 + HP15_p42g34 0.34 -1.0 27,887 + HP15_p42g34 0.36 +0.2 27,887 + HP15_p42g34 0.36 -0.1 27,905 - HP15_p42g34 0.41 -0.3 27,927 + HP15_p42g34 0.47 +0.4 27,962 + HP15_p42g34 0.56 -0.5 27,962 + HP15_p42g34 0.56 -0.0 27,967 + HP15_p42g34 0.57 -0.7 27,970 - HP15_p42g34 0.58 -0.4 27,970 - HP15_p42g34 0.58 -1.0 28,005 - HP15_p42g34 0.67 +0.6 28,012 + HP15_p42g34 0.69 -0.1 28,012 + HP15_p42g34 0.69 +0.3 28,019 + HP15_p42g34 0.71 -0.6 28,019 + HP15_p42g34 0.71 +0.8 28,019 + HP15_p42g34 0.71 -0.9 28,025 + HP15_p42g34 0.72 -0.0 28,027 - HP15_p42g34 0.73 +0.3 28,027 - HP15_p42g34 0.73 -0.6 28,062 - HP15_p42g34 0.82 +0.2
Or see this region's nucleotide sequence