Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3694 and HP15_3695 are separated by 38 nucleotides HP15_3695 and HP15_3696 overlap by 2 nucleotides
HP15_3694: HP15_3694 - efflux transporter, RND family, MFP subunit, at 3,896,476 to 3,897,570
_3694
HP15_3695: HP15_3695 - lipoprotein, at 3,897,609 to 3,898,169
_3695
HP15_3696: HP15_3696 - acyl-CoA dehydrogenase domain protein, at 3,898,168 to 3,900,237
_3696
Position (kb)
3897
3898
3899 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3896.637 kb on + strand, within HP15_3694 at 3896.637 kb on + strand, within HP15_3694 at 3896.715 kb on - strand, within HP15_3694 at 3896.786 kb on - strand, within HP15_3694 at 3896.788 kb on + strand, within HP15_3694 at 3896.836 kb on + strand, within HP15_3694 at 3896.892 kb on - strand, within HP15_3694 at 3896.912 kb on + strand, within HP15_3694 at 3896.930 kb on + strand, within HP15_3694 at 3896.938 kb on - strand, within HP15_3694 at 3896.975 kb on + strand, within HP15_3694 at 3896.976 kb on - strand, within HP15_3694 at 3896.987 kb on + strand, within HP15_3694 at 3896.995 kb on - strand, within HP15_3694 at 3896.995 kb on - strand, within HP15_3694 at 3897.043 kb on - strand, within HP15_3694 at 3897.100 kb on + strand, within HP15_3694 at 3897.118 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.176 kb on - strand, within HP15_3694 at 3897.246 kb on + strand, within HP15_3694 at 3897.257 kb on + strand, within HP15_3694 at 3897.257 kb on + strand, within HP15_3694 at 3897.265 kb on - strand, within HP15_3694 at 3897.363 kb on + strand, within HP15_3694 at 3897.373 kb on + strand, within HP15_3694 at 3897.614 kb on - strand at 3897.677 kb on - strand, within HP15_3695 at 3897.733 kb on - strand, within HP15_3695 at 3897.830 kb on + strand, within HP15_3695 at 3897.867 kb on - strand, within HP15_3695 at 3897.887 kb on + strand, within HP15_3695 at 3897.913 kb on - strand, within HP15_3695 at 3898.026 kb on + strand, within HP15_3695 at 3898.040 kb on + strand, within HP15_3695 at 3898.048 kb on - strand, within HP15_3695 at 3898.110 kb on - strand, within HP15_3695 at 3898.180 kb on - strand at 3898.180 kb on - strand at 3898.181 kb on + strand at 3898.189 kb on - strand at 3898.340 kb on + strand at 3898.389 kb on - strand, within HP15_3696 at 3898.415 kb on - strand, within HP15_3696 at 3898.476 kb on - strand, within HP15_3696 at 3898.490 kb on + strand, within HP15_3696 at 3898.495 kb on + strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.503 kb on - strand, within HP15_3696 at 3898.573 kb on + strand, within HP15_3696 at 3898.593 kb on - strand, within HP15_3696 at 3898.720 kb on + strand, within HP15_3696 at 3898.794 kb on - strand, within HP15_3696 at 3898.796 kb on + strand, within HP15_3696 at 3898.804 kb on - strand, within HP15_3696 at 3898.804 kb on - strand, within HP15_3696 at 3898.841 kb on + strand, within HP15_3696 at 3898.865 kb on + strand, within HP15_3696 at 3898.933 kb on + strand, within HP15_3696 at 3898.952 kb on - strand, within HP15_3696 at 3898.958 kb on - strand, within HP15_3696 at 3898.963 kb on + strand, within HP15_3696 at 3899.061 kb on - strand, within HP15_3696 at 3899.061 kb on - strand, within HP15_3696 at 3899.061 kb on - strand, within HP15_3696 at 3899.084 kb on - strand, within HP15_3696 at 3899.149 kb on - strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.158 kb on + strand, within HP15_3696 at 3899.166 kb on - strand, within HP15_3696 at 3899.166 kb on - strand, within HP15_3696
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 3,896,637 + HP15_3694 0.15 +1.2 3,896,637 + HP15_3694 0.15 +0.2 3,896,715 - HP15_3694 0.22 -0.1 3,896,786 - HP15_3694 0.28 +0.1 3,896,788 + HP15_3694 0.28 +1.4 3,896,836 + HP15_3694 0.33 +1.3 3,896,892 - HP15_3694 0.38 +0.1 3,896,912 + HP15_3694 0.40 -0.0 3,896,930 + HP15_3694 0.41 +1.4 3,896,938 - HP15_3694 0.42 +0.0 3,896,975 + HP15_3694 0.46 -0.1 3,896,976 - HP15_3694 0.46 +0.4 3,896,987 + HP15_3694 0.47 +0.8 3,896,995 - HP15_3694 0.47 +0.1 3,896,995 - HP15_3694 0.47 -0.5 3,897,043 - HP15_3694 0.52 +0.7 3,897,100 + HP15_3694 0.57 +0.1 3,897,118 - HP15_3694 0.59 +0.5 3,897,176 - HP15_3694 0.64 +0.9 3,897,176 - HP15_3694 0.64 -0.5 3,897,176 - HP15_3694 0.64 +0.1 3,897,246 + HP15_3694 0.70 +1.2 3,897,257 + HP15_3694 0.71 +0.6 3,897,257 + HP15_3694 0.71 -0.3 3,897,265 - HP15_3694 0.72 +0.2 3,897,363 + HP15_3694 0.81 +0.3 3,897,373 + HP15_3694 0.82 +0.4 3,897,614 - -0.9 3,897,677 - HP15_3695 0.12 +1.9 3,897,733 - HP15_3695 0.22 +0.1 3,897,830 + HP15_3695 0.39 -0.6 3,897,867 - HP15_3695 0.46 -0.6 3,897,887 + HP15_3695 0.50 +0.6 3,897,913 - HP15_3695 0.54 -0.3 3,898,026 + HP15_3695 0.74 +0.7 3,898,040 + HP15_3695 0.77 -0.1 3,898,048 - HP15_3695 0.78 +0.9 3,898,110 - HP15_3695 0.89 -0.1 3,898,180 - +0.6 3,898,180 - +0.2 3,898,181 + -0.4 3,898,189 - +1.4 3,898,340 + -0.2 3,898,389 - HP15_3696 0.11 -1.2 3,898,415 - HP15_3696 0.12 -0.9 3,898,476 - HP15_3696 0.15 -1.9 3,898,490 + HP15_3696 0.16 -1.2 3,898,495 + HP15_3696 0.16 -0.1 3,898,503 - HP15_3696 0.16 -0.4 3,898,503 - HP15_3696 0.16 -0.7 3,898,503 - HP15_3696 0.16 -0.5 3,898,573 + HP15_3696 0.20 +0.1 3,898,593 - HP15_3696 0.21 -1.3 3,898,720 + HP15_3696 0.27 +1.7 3,898,794 - HP15_3696 0.30 -0.8 3,898,796 + HP15_3696 0.30 +0.7 3,898,804 - HP15_3696 0.31 +0.5 3,898,804 - HP15_3696 0.31 +0.0 3,898,841 + HP15_3696 0.33 -0.5 3,898,865 + HP15_3696 0.34 -0.3 3,898,933 + HP15_3696 0.37 +0.5 3,898,952 - HP15_3696 0.38 -1.0 3,898,958 - HP15_3696 0.38 +0.3 3,898,963 + HP15_3696 0.38 +0.2 3,899,061 - HP15_3696 0.43 +0.7 3,899,061 - HP15_3696 0.43 +0.1 3,899,061 - HP15_3696 0.43 -1.3 3,899,084 - HP15_3696 0.44 +0.4 3,899,149 - HP15_3696 0.47 +0.1 3,899,158 + HP15_3696 0.48 -0.2 3,899,158 + HP15_3696 0.48 +0.1 3,899,158 + HP15_3696 0.48 -0.6 3,899,158 + HP15_3696 0.48 +0.1 3,899,166 - HP15_3696 0.48 +0.9 3,899,166 - HP15_3696 0.48 -1.2
Or see this region's nucleotide sequence