Experiment: m.b. Vancomycin 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01170 and PGA1_262p01180 are separated by 25 nucleotides PGA1_262p01180 and PGA1_262p01190 overlap by 4 nucleotides PGA1_262p01190 and PGA1_262p01200 are separated by 1 nucleotides PGA1_262p01200 and PGA1_262p01210 are separated by 4 nucleotides PGA1_262p01210 and PGA1_262p01220 are separated by 3 nucleotides
PGA1_262p01170: PGA1_262p01170 - putative nnrS protein, at 129,687 to 130,910
_262p01170
PGA1_262p01180: PGA1_262p01180 - hypothetical protein, at 130,936 to 131,157
_262p01180
PGA1_262p01190: PGA1_262p01190 - hypothetical protein, at 131,154 to 131,336
_262p01190
PGA1_262p01200: PGA1_262p01200 - putative protein NorD, at 131,338 to 133,275
_262p01200
PGA1_262p01210: PGA1_262p01210 - putative protein NorQ, at 133,280 to 134,074
_262p01210
PGA1_262p01220: PGA1_262p01220 - nitric oxide reductase subunit B, at 134,078 to 135,436
_262p01220
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -2
-1
0
1 at 130.443 kb on + strand, within PGA1_262p01170 at 130.493 kb on + strand, within PGA1_262p01170 at 130.504 kb on + strand, within PGA1_262p01170 at 130.569 kb on - strand, within PGA1_262p01170 at 130.572 kb on - strand, within PGA1_262p01170 at 130.621 kb on + strand, within PGA1_262p01170 at 130.695 kb on - strand, within PGA1_262p01170 at 130.695 kb on - strand, within PGA1_262p01170 at 130.762 kb on + strand, within PGA1_262p01170 at 130.798 kb on - strand at 130.912 kb on + strand at 130.912 kb on + strand at 130.912 kb on + strand at 130.920 kb on - strand at 131.053 kb on + strand, within PGA1_262p01180 at 131.214 kb on - strand, within PGA1_262p01190 at 131.325 kb on + strand at 131.526 kb on + strand at 131.526 kb on + strand at 132.090 kb on - strand, within PGA1_262p01200 at 132.157 kb on + strand, within PGA1_262p01200 at 132.200 kb on + strand, within PGA1_262p01200 at 132.200 kb on + strand, within PGA1_262p01200 at 132.208 kb on - strand, within PGA1_262p01200 at 132.450 kb on - strand, within PGA1_262p01200 at 132.824 kb on + strand, within PGA1_262p01200 at 132.879 kb on + strand, within PGA1_262p01200 at 132.970 kb on + strand, within PGA1_262p01200 at 133.046 kb on - strand, within PGA1_262p01200 at 133.290 kb on - strand at 133.407 kb on + strand, within PGA1_262p01210 at 133.438 kb on + strand, within PGA1_262p01210 at 133.507 kb on + strand, within PGA1_262p01210 at 133.607 kb on - strand, within PGA1_262p01210 at 133.618 kb on - strand, within PGA1_262p01210 at 133.796 kb on - strand, within PGA1_262p01210 at 133.821 kb on + strand, within PGA1_262p01210 at 133.982 kb on + strand, within PGA1_262p01210 at 133.988 kb on + strand, within PGA1_262p01210 at 134.107 kb on - strand at 134.108 kb on - strand at 134.239 kb on - strand, within PGA1_262p01220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.024 mg/ml remove 130,443 + PGA1_262p01170 0.62 -0.7 130,493 + PGA1_262p01170 0.66 +0.5 130,504 + PGA1_262p01170 0.67 -0.1 130,569 - PGA1_262p01170 0.72 +0.1 130,572 - PGA1_262p01170 0.72 -0.5 130,621 + PGA1_262p01170 0.76 +0.5 130,695 - PGA1_262p01170 0.82 -0.1 130,695 - PGA1_262p01170 0.82 -0.8 130,762 + PGA1_262p01170 0.88 -0.9 130,798 - -0.2 130,912 + +0.2 130,912 + -1.9 130,912 + -1.5 130,920 - -0.9 131,053 + PGA1_262p01180 0.53 +0.5 131,214 - PGA1_262p01190 0.33 +0.7 131,325 + -0.6 131,526 + +0.7 131,526 + -1.7 132,090 - PGA1_262p01200 0.39 -0.9 132,157 + PGA1_262p01200 0.42 -1.8 132,200 + PGA1_262p01200 0.44 +1.6 132,200 + PGA1_262p01200 0.44 +1.1 132,208 - PGA1_262p01200 0.45 +0.3 132,450 - PGA1_262p01200 0.57 +0.1 132,824 + PGA1_262p01200 0.77 +1.3 132,879 + PGA1_262p01200 0.80 +0.7 132,970 + PGA1_262p01200 0.84 -0.3 133,046 - PGA1_262p01200 0.88 +1.5 133,290 - +1.4 133,407 + PGA1_262p01210 0.16 +0.1 133,438 + PGA1_262p01210 0.20 -1.7 133,507 + PGA1_262p01210 0.29 -0.6 133,607 - PGA1_262p01210 0.41 -0.5 133,618 - PGA1_262p01210 0.43 -0.8 133,796 - PGA1_262p01210 0.65 +0.4 133,821 + PGA1_262p01210 0.68 -1.8 133,982 + PGA1_262p01210 0.88 +0.6 133,988 + PGA1_262p01210 0.89 -1.2 134,107 - -0.2 134,108 - -0.3 134,239 - PGA1_262p01220 0.12 -0.1
Or see this region's nucleotide sequence