Strain Fitness in Marinobacter adhaerens HP15 around HP15_3246

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3245 and HP15_3246 are separated by 61 nucleotidesHP15_3246 and HP15_3247 are separated by 145 nucleotides HP15_3245: HP15_3245 - hyaluronidase, at 3,398,863 to 3,399,987 _3245 HP15_3246: HP15_3246 - ATPase, at 3,400,049 to 3,400,507 _3246 HP15_3247: HP15_3247 - twin-arginine translocation pathway signal, at 3,400,653 to 3,401,729 _3247 Position (kb) 3400 3401Strain fitness (log2 ratio) -1 0 1at 3399.124 kb on - strand, within HP15_3245at 3400.124 kb on - strand, within HP15_3246at 3400.161 kb on - strand, within HP15_3246at 3400.163 kb on + strand, within HP15_3246at 3400.198 kb on + strand, within HP15_3246at 3400.287 kb on + strand, within HP15_3246at 3400.288 kb on + strand, within HP15_3246at 3400.288 kb on + strand, within HP15_3246at 3400.300 kb on + strand, within HP15_3246at 3400.308 kb on - strand, within HP15_3246at 3400.369 kb on + strand, within HP15_3246at 3400.454 kb on - strand, within HP15_3246at 3400.456 kb on + strand, within HP15_3246at 3400.456 kb on + strand, within HP15_3246at 3400.470 kb on - strandat 3400.623 kb on - strandat 3400.661 kb on - strandat 3400.663 kb on + strandat 3400.709 kb on - strandat 3400.898 kb on + strand, within HP15_3247at 3400.906 kb on - strand, within HP15_3247at 3400.911 kb on - strand, within HP15_3247at 3400.921 kb on - strand, within HP15_3247at 3400.935 kb on + strand, within HP15_3247at 3401.114 kb on - strand, within HP15_3247at 3401.114 kb on - strand, within HP15_3247at 3401.243 kb on + strand, within HP15_3247at 3401.243 kb on + strand, within HP15_3247at 3401.251 kb on - strand, within HP15_3247at 3401.253 kb on + strand, within HP15_3247at 3401.277 kb on - strand, within HP15_3247at 3401.293 kb on + strand, within HP15_3247at 3401.293 kb on + strand, within HP15_3247at 3401.354 kb on + strand, within HP15_3247

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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3,399,124 - HP15_3245 0.23 -0.7
3,400,124 - HP15_3246 0.16 -0.2
3,400,161 - HP15_3246 0.24 -0.4
3,400,163 + HP15_3246 0.25 -0.5
3,400,198 + HP15_3246 0.32 -0.4
3,400,287 + HP15_3246 0.52 -0.5
3,400,288 + HP15_3246 0.52 -0.1
3,400,288 + HP15_3246 0.52 +0.3
3,400,300 + HP15_3246 0.55 -0.1
3,400,308 - HP15_3246 0.56 -0.3
3,400,369 + HP15_3246 0.70 +0.6
3,400,454 - HP15_3246 0.88 -1.3
3,400,456 + HP15_3246 0.89 +0.2
3,400,456 + HP15_3246 0.89 +0.5
3,400,470 - +0.4
3,400,623 - +0.5
3,400,661 - +0.6
3,400,663 + -0.3
3,400,709 - +0.3
3,400,898 + HP15_3247 0.23 -0.4
3,400,906 - HP15_3247 0.23 -0.6
3,400,911 - HP15_3247 0.24 -0.7
3,400,921 - HP15_3247 0.25 -0.6
3,400,935 + HP15_3247 0.26 -0.8
3,401,114 - HP15_3247 0.43 -1.2
3,401,114 - HP15_3247 0.43 +0.1
3,401,243 + HP15_3247 0.55 -0.5
3,401,243 + HP15_3247 0.55 -0.0
3,401,251 - HP15_3247 0.56 -0.0
3,401,253 + HP15_3247 0.56 +1.6
3,401,277 - HP15_3247 0.58 +0.2
3,401,293 + HP15_3247 0.59 -0.0
3,401,293 + HP15_3247 0.59 -0.2
3,401,354 + HP15_3247 0.65 -0.7

Or see this region's nucleotide sequence