Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3005 and HP15_3006 are separated by 20 nucleotides HP15_3006 and HP15_3007 are separated by 97 nucleotides
HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832
_3005
HP15_3006: HP15_3006 - peptidase M23B, at 3,150,853 to 3,151,986
_3006
HP15_3007: HP15_3007 - carboxyl-terminal protease family protein, at 3,152,084 to 3,153,490
_3007
Position (kb)
3150
3151
3152 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3150.825 kb on - strand at 3150.853 kb on + strand at 3150.885 kb on + strand at 3150.908 kb on - strand at 3150.928 kb on - strand at 3150.956 kb on + strand at 3151.012 kb on - strand, within HP15_3006 at 3151.113 kb on + strand, within HP15_3006 at 3151.187 kb on - strand, within HP15_3006 at 3151.268 kb on - strand, within HP15_3006 at 3151.271 kb on + strand, within HP15_3006 at 3151.304 kb on + strand, within HP15_3006 at 3151.340 kb on + strand, within HP15_3006 at 3151.380 kb on + strand, within HP15_3006 at 3151.388 kb on - strand, within HP15_3006 at 3151.390 kb on + strand, within HP15_3006 at 3151.572 kb on - strand, within HP15_3006 at 3151.617 kb on + strand, within HP15_3006 at 3151.625 kb on - strand, within HP15_3006 at 3151.646 kb on - strand, within HP15_3006 at 3151.647 kb on - strand, within HP15_3006 at 3151.729 kb on + strand, within HP15_3006 at 3151.772 kb on + strand, within HP15_3006 at 3151.780 kb on - strand, within HP15_3006 at 3151.780 kb on - strand, within HP15_3006 at 3151.929 kb on - strand at 3151.936 kb on - strand at 3151.956 kb on + strand at 3151.969 kb on - strand at 3152.023 kb on + strand at 3152.025 kb on - strand at 3152.092 kb on + strand at 3152.105 kb on + strand at 3152.105 kb on - strand at 3152.175 kb on - strand at 3152.175 kb on - strand at 3152.175 kb on - strand at 3152.187 kb on - strand at 3152.238 kb on + strand, within HP15_3007 at 3152.526 kb on + strand, within HP15_3007 at 3152.613 kb on - strand, within HP15_3007 at 3152.769 kb on + strand, within HP15_3007 at 3152.803 kb on + strand, within HP15_3007 at 3152.811 kb on - strand, within HP15_3007 at 3152.811 kb on - strand, within HP15_3007 at 3152.856 kb on + strand, within HP15_3007 at 3152.903 kb on + strand, within HP15_3007 at 3152.903 kb on + strand, within HP15_3007 at 3152.905 kb on + strand, within HP15_3007 at 3152.916 kb on + strand, within HP15_3007
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 3,150,825 - -0.7 3,150,853 + -0.7 3,150,885 + +0.1 3,150,908 - -0.2 3,150,928 - -1.9 3,150,956 + -1.7 3,151,012 - HP15_3006 0.14 -0.7 3,151,113 + HP15_3006 0.23 -0.7 3,151,187 - HP15_3006 0.29 -0.9 3,151,268 - HP15_3006 0.37 -0.5 3,151,271 + HP15_3006 0.37 -1.5 3,151,304 + HP15_3006 0.40 -1.0 3,151,340 + HP15_3006 0.43 -1.3 3,151,380 + HP15_3006 0.46 -0.8 3,151,388 - HP15_3006 0.47 -0.8 3,151,390 + HP15_3006 0.47 +0.0 3,151,572 - HP15_3006 0.63 -0.2 3,151,617 + HP15_3006 0.67 -1.0 3,151,625 - HP15_3006 0.68 -0.9 3,151,646 - HP15_3006 0.70 -0.9 3,151,647 - HP15_3006 0.70 -1.6 3,151,729 + HP15_3006 0.77 -1.3 3,151,772 + HP15_3006 0.81 +0.1 3,151,780 - HP15_3006 0.82 -1.5 3,151,780 - HP15_3006 0.82 -1.3 3,151,929 - +0.1 3,151,936 - -0.1 3,151,956 + +0.3 3,151,969 - -0.8 3,152,023 + -0.0 3,152,025 - -0.2 3,152,092 + +0.1 3,152,105 + -0.6 3,152,105 - -1.4 3,152,175 - -0.9 3,152,175 - -0.8 3,152,175 - +0.2 3,152,187 - -0.9 3,152,238 + HP15_3007 0.11 -0.3 3,152,526 + HP15_3007 0.31 +1.9 3,152,613 - HP15_3007 0.38 +0.9 3,152,769 + HP15_3007 0.49 -0.2 3,152,803 + HP15_3007 0.51 -0.3 3,152,811 - HP15_3007 0.52 +0.1 3,152,811 - HP15_3007 0.52 +0.3 3,152,856 + HP15_3007 0.55 -0.4 3,152,903 + HP15_3007 0.58 -1.0 3,152,903 + HP15_3007 0.58 -0.8 3,152,905 + HP15_3007 0.58 -0.1 3,152,916 + HP15_3007 0.59 +0.5
Or see this region's nucleotide sequence