Strain Fitness in Marinobacter adhaerens HP15 around HP15_2962

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2960 and HP15_2961 overlap by 14 nucleotidesHP15_2961 and HP15_2962 are separated by 96 nucleotidesHP15_2962 and HP15_2963 are separated by 33 nucleotides HP15_2960: HP15_2960 - two-component sensor, at 3,104,467 to 3,105,933 _2960 HP15_2961: HP15_2961 - two component transcriptional regulator, winged helix family, at 3,105,920 to 3,106,660 _2961 HP15_2962: HP15_2962 - conserved hypothetical protein, secreted, at 3,106,757 to 3,108,001 _2962 HP15_2963: HP15_2963 - phosphoglycolate phosphatase, at 3,108,035 to 3,109,684 _2963 Position (kb) 3106 3107 3108 3109Strain fitness (log2 ratio) -1 0 1at 3105.863 kb on - strandat 3105.975 kb on + strandat 3105.983 kb on - strandat 3105.999 kb on - strand, within HP15_2961at 3106.006 kb on - strand, within HP15_2961at 3106.084 kb on + strand, within HP15_2961at 3106.097 kb on - strand, within HP15_2961at 3106.103 kb on + strand, within HP15_2961at 3106.125 kb on + strand, within HP15_2961at 3106.155 kb on + strand, within HP15_2961at 3106.168 kb on - strand, within HP15_2961at 3106.264 kb on + strand, within HP15_2961at 3106.272 kb on - strand, within HP15_2961at 3106.303 kb on - strand, within HP15_2961at 3106.313 kb on + strand, within HP15_2961at 3106.344 kb on + strand, within HP15_2961at 3106.462 kb on + strand, within HP15_2961at 3106.544 kb on - strand, within HP15_2961at 3106.567 kb on - strand, within HP15_2961at 3106.637 kb on + strandat 3106.726 kb on - strandat 3106.834 kb on + strandat 3106.835 kb on + strandat 3106.842 kb on - strandat 3106.973 kb on + strand, within HP15_2962at 3106.973 kb on + strand, within HP15_2962at 3107.081 kb on - strand, within HP15_2962at 3107.191 kb on - strand, within HP15_2962at 3107.217 kb on + strand, within HP15_2962at 3107.239 kb on + strand, within HP15_2962at 3107.239 kb on + strand, within HP15_2962at 3107.247 kb on - strand, within HP15_2962at 3107.247 kb on - strand, within HP15_2962at 3107.254 kb on + strand, within HP15_2962at 3107.272 kb on - strand, within HP15_2962at 3107.317 kb on - strand, within HP15_2962at 3107.321 kb on + strand, within HP15_2962at 3107.356 kb on + strand, within HP15_2962at 3107.361 kb on + strand, within HP15_2962at 3107.361 kb on + strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.369 kb on - strand, within HP15_2962at 3107.411 kb on + strand, within HP15_2962at 3107.433 kb on + strand, within HP15_2962at 3107.552 kb on + strand, within HP15_2962at 3107.584 kb on - strand, within HP15_2962at 3107.662 kb on - strand, within HP15_2962at 3107.753 kb on + strand, within HP15_2962at 3107.763 kb on + strand, within HP15_2962at 3107.771 kb on - strand, within HP15_2962at 3107.970 kb on + strandat 3107.985 kb on + strandat 3107.990 kb on + strandat 3107.990 kb on + strandat 3107.993 kb on - strandat 3108.056 kb on + strandat 3108.069 kb on + strandat 3108.069 kb on + strandat 3108.069 kb on + strandat 3108.070 kb on - strandat 3108.118 kb on - strandat 3108.188 kb on + strandat 3108.188 kb on + strandat 3108.188 kb on + strandat 3108.188 kb on + strandat 3108.300 kb on + strand, within HP15_2963at 3108.316 kb on + strand, within HP15_2963at 3108.316 kb on + strand, within HP15_2963at 3108.330 kb on + strand, within HP15_2963at 3108.445 kb on + strand, within HP15_2963at 3108.446 kb on + strand, within HP15_2963at 3108.480 kb on - strand, within HP15_2963at 3108.497 kb on + strand, within HP15_2963at 3108.501 kb on - strand, within HP15_2963at 3108.505 kb on + strand, within HP15_2963at 3108.507 kb on + strand, within HP15_2963at 3108.582 kb on - strand, within HP15_2963at 3108.582 kb on - strand, within HP15_2963at 3108.617 kb on - strand, within HP15_2963at 3108.763 kb on - strand, within HP15_2963at 3108.924 kb on - strand, within HP15_2963at 3108.924 kb on - strand, within HP15_2963at 3108.957 kb on - strand, within HP15_2963at 3108.970 kb on + strand, within HP15_2963

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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3,105,863 - -0.1
3,105,975 + -0.0
3,105,983 - +1.1
3,105,999 - HP15_2961 0.11 +0.0
3,106,006 - HP15_2961 0.12 +0.4
3,106,084 + HP15_2961 0.22 +0.2
3,106,097 - HP15_2961 0.24 +1.1
3,106,103 + HP15_2961 0.25 -0.1
3,106,125 + HP15_2961 0.28 -0.3
3,106,155 + HP15_2961 0.32 +1.2
3,106,168 - HP15_2961 0.33 +0.9
3,106,264 + HP15_2961 0.46 +0.7
3,106,272 - HP15_2961 0.48 -0.3
3,106,303 - HP15_2961 0.52 -0.5
3,106,313 + HP15_2961 0.53 +0.7
3,106,344 + HP15_2961 0.57 -0.5
3,106,462 + HP15_2961 0.73 -1.2
3,106,544 - HP15_2961 0.84 -0.1
3,106,567 - HP15_2961 0.87 -0.3
3,106,637 + +0.2
3,106,726 - -0.3
3,106,834 + -0.2
3,106,835 + +0.1
3,106,842 - -0.3
3,106,973 + HP15_2962 0.17 +0.5
3,106,973 + HP15_2962 0.17 -0.1
3,107,081 - HP15_2962 0.26 +0.4
3,107,191 - HP15_2962 0.35 +1.0
3,107,217 + HP15_2962 0.37 -1.3
3,107,239 + HP15_2962 0.39 -0.6
3,107,239 + HP15_2962 0.39 -0.4
3,107,247 - HP15_2962 0.39 -0.2
3,107,247 - HP15_2962 0.39 +0.7
3,107,254 + HP15_2962 0.40 +1.6
3,107,272 - HP15_2962 0.41 -0.1
3,107,317 - HP15_2962 0.45 +0.4
3,107,321 + HP15_2962 0.45 -0.4
3,107,356 + HP15_2962 0.48 +0.2
3,107,361 + HP15_2962 0.49 +0.9
3,107,361 + HP15_2962 0.49 -0.1
3,107,369 - HP15_2962 0.49 +0.0
3,107,369 - HP15_2962 0.49 -0.2
3,107,369 - HP15_2962 0.49 -0.7
3,107,369 - HP15_2962 0.49 -0.1
3,107,369 - HP15_2962 0.49 +0.0
3,107,411 + HP15_2962 0.53 -0.2
3,107,433 + HP15_2962 0.54 -0.0
3,107,552 + HP15_2962 0.64 +1.3
3,107,584 - HP15_2962 0.66 +0.1
3,107,662 - HP15_2962 0.73 +0.4
3,107,753 + HP15_2962 0.80 +0.2
3,107,763 + HP15_2962 0.81 -0.2
3,107,771 - HP15_2962 0.81 +0.6
3,107,970 + -0.0
3,107,985 + -0.0
3,107,990 + -0.0
3,107,990 + +0.5
3,107,993 - -0.3
3,108,056 + +1.1
3,108,069 + -0.4
3,108,069 + +0.7
3,108,069 + +0.4
3,108,070 - +0.2
3,108,118 - -0.3
3,108,188 + -0.0
3,108,188 + +0.1
3,108,188 + +0.1
3,108,188 + -0.1
3,108,300 + HP15_2963 0.16 -1.0
3,108,316 + HP15_2963 0.17 +1.2
3,108,316 + HP15_2963 0.17 +0.3
3,108,330 + HP15_2963 0.18 -0.4
3,108,445 + HP15_2963 0.25 +0.3
3,108,446 + HP15_2963 0.25 -0.2
3,108,480 - HP15_2963 0.27 +0.5
3,108,497 + HP15_2963 0.28 -0.6
3,108,501 - HP15_2963 0.28 +0.3
3,108,505 + HP15_2963 0.28 -0.2
3,108,507 + HP15_2963 0.29 -0.6
3,108,582 - HP15_2963 0.33 -1.0
3,108,582 - HP15_2963 0.33 +0.3
3,108,617 - HP15_2963 0.35 +1.4
3,108,763 - HP15_2963 0.44 -0.5
3,108,924 - HP15_2963 0.54 +0.1
3,108,924 - HP15_2963 0.54 -0.1
3,108,957 - HP15_2963 0.56 +0.6
3,108,970 + HP15_2963 0.57 +1.4

Or see this region's nucleotide sequence