Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2647 and HP15_2648 are separated by 32 nucleotides HP15_2648 and HP15_2649 overlap by 14 nucleotides HP15_2649 and HP15_2650 overlap by 4 nucleotides
HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111
_2647
HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596
_2648
HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518
_2649
HP15_2650: HP15_2650 - selenoprotein W-related protein, at 2,800,515 to 2,800,805
_2650
Position (kb)
2799
2800 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2798.155 kb on - strand, within HP15_2647 at 2798.175 kb on + strand, within HP15_2647 at 2798.398 kb on + strand, within HP15_2647 at 2798.425 kb on + strand, within HP15_2647 at 2798.495 kb on - strand, within HP15_2647 at 2798.517 kb on - strand, within HP15_2647 at 2798.573 kb on - strand, within HP15_2647 at 2798.617 kb on - strand, within HP15_2647 at 2798.633 kb on + strand, within HP15_2647 at 2798.904 kb on + strand, within HP15_2647 at 2798.991 kb on - strand at 2799.071 kb on - strand at 2799.130 kb on + strand at 2799.279 kb on - strand, within HP15_2648 at 2799.399 kb on - strand, within HP15_2648 at 2799.401 kb on + strand, within HP15_2648 at 2799.460 kb on + strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.545 kb on - strand, within HP15_2648 at 2799.552 kb on - strand at 2799.918 kb on - strand, within HP15_2649 at 2799.924 kb on - strand, within HP15_2649 at 2800.014 kb on + strand, within HP15_2649 at 2800.022 kb on - strand, within HP15_2649 at 2800.120 kb on - strand, within HP15_2649 at 2800.212 kb on + strand, within HP15_2649 at 2800.305 kb on - strand, within HP15_2649
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 2,798,155 - HP15_2647 0.42 -0.2 2,798,175 + HP15_2647 0.43 -0.8 2,798,398 + HP15_2647 0.57 -0.4 2,798,425 + HP15_2647 0.58 -0.8 2,798,495 - HP15_2647 0.63 -0.1 2,798,517 - HP15_2647 0.64 -0.8 2,798,573 - HP15_2647 0.67 +0.5 2,798,617 - HP15_2647 0.70 +0.0 2,798,633 + HP15_2647 0.71 +0.4 2,798,904 + HP15_2647 0.87 -3.1 2,798,991 - +0.4 2,799,071 - +0.8 2,799,130 + -0.5 2,799,279 - HP15_2648 0.30 -0.2 2,799,399 - HP15_2648 0.56 -0.2 2,799,401 + HP15_2648 0.57 +0.3 2,799,460 + HP15_2648 0.70 +0.6 2,799,545 - HP15_2648 0.89 -0.3 2,799,545 - HP15_2648 0.89 +0.0 2,799,545 - HP15_2648 0.89 -0.6 2,799,552 - -0.2 2,799,918 - HP15_2649 0.36 +0.4 2,799,924 - HP15_2649 0.36 -0.0 2,800,014 + HP15_2649 0.46 -0.4 2,800,022 - HP15_2649 0.47 +0.1 2,800,120 - HP15_2649 0.57 -0.1 2,800,212 + HP15_2649 0.67 +0.0 2,800,305 - HP15_2649 0.77 -0.9
Or see this region's nucleotide sequence