Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2501 and HP15_2502 are separated by 35 nucleotides HP15_2502 and HP15_2503 are separated by 38 nucleotides HP15_2503 and HP15_2504 are separated by 5 nucleotides
HP15_2501: HP15_2501 - DNA mismatch repair protein mutL, at 2,640,633 to 2,642,527
_2501
HP15_2502: HP15_2502 - N-acetylmuramoyl-L-alanine amidase-like protein, at 2,642,563 to 2,643,921
_2502
HP15_2503: HP15_2503 - protein containing uncharacterized protein family UPF0079, ATPase bacteria domains, at 2,643,960 to 2,644,448
_2503
HP15_2504: HP15_2504 - carbohydrate kinase, YjeF related protein, at 2,644,454 to 2,645,953
_2504
Position (kb)
2642
2643
2644 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2642.109 kb on - strand, within HP15_2501 at 2642.220 kb on - strand, within HP15_2501 at 2642.221 kb on - strand, within HP15_2501 at 2642.594 kb on + strand at 2642.618 kb on + strand at 2642.753 kb on + strand, within HP15_2502 at 2643.906 kb on + strand at 2644.452 kb on + strand at 2644.551 kb on - strand at 2644.625 kb on - strand, within HP15_2504 at 2644.877 kb on + strand, within HP15_2504
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 2,642,109 - HP15_2501 0.78 -0.9 2,642,220 - HP15_2501 0.84 -2.0 2,642,221 - HP15_2501 0.84 -0.8 2,642,594 + -1.0 2,642,618 + +0.1 2,642,753 + HP15_2502 0.14 -1.3 2,643,906 + -3.0 2,644,452 + -0.6 2,644,551 - +0.4 2,644,625 - HP15_2504 0.11 -0.3 2,644,877 + HP15_2504 0.28 +0.9
Or see this region's nucleotide sequence