Experiment: m.b. Vancomycin 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24110 and PGA1_c24120 are separated by 251 nucleotides PGA1_c24120 and PGA1_c24130 are separated by 165 nucleotides PGA1_c24130 and PGA1_c24140 are separated by 9 nucleotides PGA1_c24140 and PGA1_c24150 are separated by 152 nucleotides
PGA1_c24110: PGA1_c24110 - hypothetical protein, at 2,517,042 to 2,517,224
_c24110
PGA1_c24120: PGA1_c24120 - hypothetical protein, at 2,517,476 to 2,517,787
_c24120
PGA1_c24130: PGA1_c24130 - transcriptional regulator, LysR family, at 2,517,953 to 2,518,930
_c24130
PGA1_c24140: PGA1_c24140 - protein-tyrosine phosphatase, at 2,518,940 to 2,519,380
_c24140
PGA1_c24150: PGA1_c24150 - Uncharacterized protein conserved in bacteria, at 2,519,533 to 2,520,003
_c24150
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-2
-1
0
1 at 2516.956 kb on - strand at 2517.032 kb on - strand at 2517.032 kb on - strand at 2517.050 kb on + strand at 2517.050 kb on + strand at 2517.050 kb on + strand at 2517.071 kb on - strand, within PGA1_c24110 at 2517.095 kb on + strand, within PGA1_c24110 at 2517.098 kb on - strand, within PGA1_c24110 at 2517.101 kb on + strand, within PGA1_c24110 at 2517.102 kb on + strand, within PGA1_c24110 at 2517.103 kb on - strand, within PGA1_c24110 at 2517.144 kb on - strand, within PGA1_c24110 at 2517.168 kb on + strand, within PGA1_c24110 at 2517.176 kb on - strand, within PGA1_c24110 at 2517.208 kb on + strand at 2517.216 kb on - strand at 2517.216 kb on - strand at 2517.216 kb on - strand at 2517.216 kb on - strand at 2517.272 kb on + strand at 2517.295 kb on - strand at 2517.388 kb on - strand at 2517.403 kb on + strand at 2517.433 kb on - strand at 2517.433 kb on - strand at 2517.435 kb on + strand at 2517.435 kb on + strand at 2517.440 kb on + strand at 2517.440 kb on + strand at 2517.443 kb on - strand at 2517.448 kb on - strand at 2517.507 kb on - strand at 2517.792 kb on - strand at 2517.794 kb on - strand at 2517.860 kb on + strand at 2517.913 kb on + strand at 2517.937 kb on + strand at 2517.945 kb on - strand at 2517.974 kb on - strand at 2517.974 kb on - strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2518.025 kb on - strand at 2518.037 kb on - strand at 2518.037 kb on - strand at 2518.078 kb on - strand, within PGA1_c24130 at 2518.106 kb on - strand, within PGA1_c24130 at 2518.168 kb on + strand, within PGA1_c24130 at 2518.217 kb on - strand, within PGA1_c24130 at 2518.242 kb on - strand, within PGA1_c24130 at 2518.242 kb on - strand, within PGA1_c24130 at 2518.306 kb on + strand, within PGA1_c24130 at 2518.696 kb on - strand, within PGA1_c24130 at 2518.828 kb on - strand, within PGA1_c24130 at 2518.841 kb on + strand at 2518.954 kb on + strand at 2518.958 kb on - strand at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2519.020 kb on + strand, within PGA1_c24140 at 2519.032 kb on + strand, within PGA1_c24140 at 2519.037 kb on - strand, within PGA1_c24140 at 2519.044 kb on + strand, within PGA1_c24140 at 2519.097 kb on - strand, within PGA1_c24140 at 2519.123 kb on + strand, within PGA1_c24140 at 2519.132 kb on - strand, within PGA1_c24140 at 2519.144 kb on - strand, within PGA1_c24140 at 2519.174 kb on + strand, within PGA1_c24140 at 2519.182 kb on - strand, within PGA1_c24140 at 2519.272 kb on + strand, within PGA1_c24140 at 2519.293 kb on + strand, within PGA1_c24140 at 2519.318 kb on + strand, within PGA1_c24140 at 2519.397 kb on - strand at 2519.397 kb on - strand at 2519.399 kb on + strand at 2519.401 kb on + strand at 2519.404 kb on - strand at 2519.432 kb on + strand at 2519.432 kb on + strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.473 kb on + strand at 2519.500 kb on - strand at 2519.528 kb on + strand at 2519.534 kb on + strand at 2519.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.024 mg/ml remove 2,516,956 - -0.3 2,517,032 - -0.6 2,517,032 - -0.9 2,517,050 + -0.1 2,517,050 + -0.6 2,517,050 + -0.1 2,517,071 - PGA1_c24110 0.16 +1.0 2,517,095 + PGA1_c24110 0.29 +0.7 2,517,098 - PGA1_c24110 0.31 +0.1 2,517,101 + PGA1_c24110 0.32 +0.1 2,517,102 + PGA1_c24110 0.33 -0.4 2,517,103 - PGA1_c24110 0.33 -0.7 2,517,144 - PGA1_c24110 0.56 +0.3 2,517,168 + PGA1_c24110 0.69 +0.1 2,517,176 - PGA1_c24110 0.73 +0.4 2,517,208 + -0.2 2,517,216 - -0.4 2,517,216 - +0.5 2,517,216 - -0.1 2,517,216 - -0.6 2,517,272 + -0.6 2,517,295 - +0.6 2,517,388 - -2.0 2,517,403 + +0.7 2,517,433 - -0.0 2,517,433 - -0.8 2,517,435 + -1.2 2,517,435 + -0.6 2,517,440 + -1.1 2,517,440 + +0.9 2,517,443 - -0.8 2,517,448 - +0.3 2,517,507 - -0.6 2,517,792 - +0.5 2,517,794 - -1.1 2,517,860 + -0.2 2,517,913 + -0.3 2,517,937 + +0.0 2,517,945 - -0.1 2,517,974 - +0.7 2,517,974 - +0.5 2,517,981 + -0.8 2,517,981 + +0.2 2,517,981 + -0.5 2,517,981 + -0.9 2,517,981 + +0.4 2,517,981 + -1.2 2,517,981 + -0.7 2,517,981 + +1.3 2,517,981 + -0.7 2,517,981 + -0.5 2,517,981 + -1.1 2,517,981 + -0.4 2,517,981 + -0.9 2,517,989 - -0.2 2,517,989 - +1.2 2,517,989 - +0.1 2,517,989 - +0.7 2,517,989 - -0.1 2,517,989 - -2.5 2,517,989 - -0.4 2,517,989 - -1.1 2,517,989 - -1.2 2,517,989 - -1.0 2,517,989 - -0.7 2,517,989 - -0.4 2,517,989 - +0.7 2,517,989 - -0.5 2,518,025 - -0.5 2,518,037 - -0.6 2,518,037 - +0.1 2,518,078 - PGA1_c24130 0.13 -0.3 2,518,106 - PGA1_c24130 0.16 -1.1 2,518,168 + PGA1_c24130 0.22 -1.4 2,518,217 - PGA1_c24130 0.27 -1.2 2,518,242 - PGA1_c24130 0.30 -0.6 2,518,242 - PGA1_c24130 0.30 -1.0 2,518,306 + PGA1_c24130 0.36 -0.6 2,518,696 - PGA1_c24130 0.76 -2.1 2,518,828 - PGA1_c24130 0.89 -1.0 2,518,841 + -0.0 2,518,954 + -1.0 2,518,958 - -0.6 2,518,984 + PGA1_c24140 0.10 +0.8 2,518,984 + PGA1_c24140 0.10 -2.1 2,518,984 + PGA1_c24140 0.10 -1.4 2,518,984 + PGA1_c24140 0.10 -0.9 2,518,984 + PGA1_c24140 0.10 +0.1 2,519,020 + PGA1_c24140 0.18 -0.0 2,519,032 + PGA1_c24140 0.21 -0.2 2,519,037 - PGA1_c24140 0.22 -0.2 2,519,044 + PGA1_c24140 0.24 +0.5 2,519,097 - PGA1_c24140 0.36 -0.4 2,519,123 + PGA1_c24140 0.41 +1.3 2,519,132 - PGA1_c24140 0.44 +0.7 2,519,144 - PGA1_c24140 0.46 -1.4 2,519,174 + PGA1_c24140 0.53 -0.2 2,519,182 - PGA1_c24140 0.55 -0.8 2,519,272 + PGA1_c24140 0.75 +0.9 2,519,293 + PGA1_c24140 0.80 -0.6 2,519,318 + PGA1_c24140 0.86 +1.1 2,519,397 - -0.5 2,519,397 - +1.0 2,519,399 + +0.7 2,519,401 + -0.8 2,519,404 - -0.2 2,519,432 + +0.2 2,519,432 + +0.5 2,519,440 - +0.8 2,519,440 - +0.2 2,519,440 - +0.7 2,519,440 - -1.1 2,519,473 + +0.1 2,519,500 - -0.1 2,519,528 + -0.4 2,519,534 + -0.0 2,519,572 - -0.2
Or see this region's nucleotide sequence