Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20260

Experiment: m.b. Vancomycin 0.024 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20240 and PGA1_c20250 are separated by 18 nucleotidesPGA1_c20250 and PGA1_c20260 are separated by 23 nucleotidesPGA1_c20260 and PGA1_c20270 are separated by 143 nucleotides PGA1_c20240: PGA1_c20240 - Helix-turn-helix., at 2,100,267 to 2,101,073 _c20240 PGA1_c20250: PGA1_c20250 - Predicted integral membrane protein, at 2,101,092 to 2,101,862 _c20250 PGA1_c20260: PGA1_c20260 - amidase-like protein, at 2,101,886 to 2,103,310 _c20260 PGA1_c20270: PGA1_c20270 - peptide chain release factor 2, at 2,103,454 to 2,104,578 _c20270 Position (kb) 2101 2102 2103 2104Strain fitness (log2 ratio) -2 -1 0 1at 2100.945 kb on - strand, within PGA1_c20240at 2100.947 kb on - strand, within PGA1_c20240at 2100.981 kb on - strand, within PGA1_c20240at 2100.983 kb on - strand, within PGA1_c20240at 2100.997 kb on + strandat 2101.030 kb on + strandat 2101.038 kb on - strandat 2101.072 kb on - strandat 2101.090 kb on + strandat 2101.098 kb on - strandat 2101.145 kb on + strandat 2101.216 kb on + strand, within PGA1_c20250at 2101.369 kb on + strand, within PGA1_c20250at 2101.376 kb on - strand, within PGA1_c20250at 2101.447 kb on + strand, within PGA1_c20250at 2101.447 kb on + strand, within PGA1_c20250at 2101.483 kb on + strand, within PGA1_c20250at 2101.493 kb on + strand, within PGA1_c20250at 2101.644 kb on - strand, within PGA1_c20250at 2101.701 kb on + strand, within PGA1_c20250at 2101.799 kb on - strandat 2101.870 kb on + strandat 2101.892 kb on + strandat 2101.940 kb on - strandat 2102.041 kb on - strand, within PGA1_c20260at 2102.100 kb on - strand, within PGA1_c20260at 2102.145 kb on - strand, within PGA1_c20260at 2102.171 kb on + strand, within PGA1_c20260at 2102.171 kb on + strand, within PGA1_c20260at 2102.256 kb on - strand, within PGA1_c20260at 2102.281 kb on + strand, within PGA1_c20260at 2102.480 kb on + strand, within PGA1_c20260at 2102.525 kb on - strand, within PGA1_c20260at 2102.770 kb on + strand, within PGA1_c20260at 2102.776 kb on - strand, within PGA1_c20260at 2102.776 kb on - strand, within PGA1_c20260at 2102.873 kb on - strand, within PGA1_c20260at 2102.914 kb on + strand, within PGA1_c20260at 2102.916 kb on - strand, within PGA1_c20260at 2102.941 kb on + strand, within PGA1_c20260at 2102.949 kb on + strand, within PGA1_c20260at 2102.957 kb on - strand, within PGA1_c20260at 2103.047 kb on - strand, within PGA1_c20260at 2103.051 kb on - strand, within PGA1_c20260at 2103.129 kb on - strand, within PGA1_c20260at 2103.228 kb on + strandat 2103.236 kb on - strandat 2103.249 kb on - strandat 2103.320 kb on + strandat 2103.330 kb on + strandat 2103.330 kb on + strandat 2103.330 kb on + strandat 2103.330 kb on + strandat 2103.338 kb on - strandat 2103.338 kb on - strandat 2103.338 kb on - strandat 2103.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.024 mg/ml
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2,100,945 - PGA1_c20240 0.84 +0.5
2,100,947 - PGA1_c20240 0.84 -0.6
2,100,981 - PGA1_c20240 0.88 +0.4
2,100,983 - PGA1_c20240 0.89 -0.6
2,100,997 + -0.6
2,101,030 + +0.3
2,101,038 - -0.5
2,101,072 - +0.6
2,101,090 + -0.4
2,101,098 - -1.4
2,101,145 + -1.7
2,101,216 + PGA1_c20250 0.16 -0.2
2,101,369 + PGA1_c20250 0.36 +0.7
2,101,376 - PGA1_c20250 0.37 -0.2
2,101,447 + PGA1_c20250 0.46 +0.0
2,101,447 + PGA1_c20250 0.46 +0.0
2,101,483 + PGA1_c20250 0.51 -0.2
2,101,493 + PGA1_c20250 0.52 +1.0
2,101,644 - PGA1_c20250 0.72 +0.0
2,101,701 + PGA1_c20250 0.79 -1.3
2,101,799 - -0.1
2,101,870 + -0.6
2,101,892 + -0.7
2,101,940 - -0.2
2,102,041 - PGA1_c20260 0.11 -1.4
2,102,100 - PGA1_c20260 0.15 +0.4
2,102,145 - PGA1_c20260 0.18 +0.9
2,102,171 + PGA1_c20260 0.20 +0.1
2,102,171 + PGA1_c20260 0.20 -1.0
2,102,256 - PGA1_c20260 0.26 +0.3
2,102,281 + PGA1_c20260 0.28 -0.3
2,102,480 + PGA1_c20260 0.42 +0.1
2,102,525 - PGA1_c20260 0.45 +0.3
2,102,770 + PGA1_c20260 0.62 -2.0
2,102,776 - PGA1_c20260 0.62 -0.2
2,102,776 - PGA1_c20260 0.62 -0.6
2,102,873 - PGA1_c20260 0.69 -0.4
2,102,914 + PGA1_c20260 0.72 +0.5
2,102,916 - PGA1_c20260 0.72 +0.4
2,102,941 + PGA1_c20260 0.74 +0.8
2,102,949 + PGA1_c20260 0.75 +0.3
2,102,957 - PGA1_c20260 0.75 -0.6
2,103,047 - PGA1_c20260 0.81 +0.7
2,103,051 - PGA1_c20260 0.82 +0.0
2,103,129 - PGA1_c20260 0.87 -1.2
2,103,228 + +0.6
2,103,236 - +0.0
2,103,249 - +1.7
2,103,320 + -1.2
2,103,330 + -0.2
2,103,330 + +0.1
2,103,330 + -0.4
2,103,330 + +0.7
2,103,338 - +0.6
2,103,338 - -0.3
2,103,338 - -0.3
2,103,430 + +0.8

Or see this region's nucleotide sequence