Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1646 and HP15_1647 are separated by 12 nucleotides HP15_1647 and HP15_1648 are separated by 51 nucleotides HP15_1648 and HP15_1649 are separated by 84 nucleotides HP15_1649 and HP15_1650 are separated by 115 nucleotides HP15_1650 and HP15_1651 are separated by 17 nucleotides
HP15_1646: HP15_1646 - conserved hypothetical protein, at 1,743,878 to 1,744,627
_1646
HP15_1647: HP15_1647 - DoxX, at 1,744,640 to 1,745,095
_1647
HP15_1648: HP15_1648 - protein containing thioredoxin domain, at 1,745,147 to 1,745,542
_1648
HP15_1649: HP15_1649 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,745,627 to 1,747,027
_1649
HP15_1650: HP15_1650 - iron-sulfur cluster-binding protein-like protein, at 1,747,143 to 1,747,439
_1650
HP15_1651: HP15_1651 - iron-sulfur cluster-binding protein, at 1,747,457 to 1,748,536
_1651
Position (kb) 1745
1746
1747
1748 Strain fitness (log2 ratio) -1
0
1
2 at 1744.829 kb on - strand, within HP15_1647 at 1745.040 kb on + strand, within HP15_1647 at 1745.040 kb on + strand, within HP15_1647 at 1745.090 kb on + strand at 1745.090 kb on + strand at 1745.104 kb on + strand at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.292 kb on + strand, within HP15_1648 at 1745.297 kb on + strand, within HP15_1648 at 1745.300 kb on - strand, within HP15_1648 at 1745.300 kb on - strand, within HP15_1648 at 1745.362 kb on + strand, within HP15_1648 at 1745.367 kb on + strand, within HP15_1648 at 1745.419 kb on - strand, within HP15_1648 at 1745.489 kb on + strand, within HP15_1648 at 1745.626 kb on - strand at 1745.626 kb on - strand at 1745.742 kb on + strand at 1745.888 kb on - strand, within HP15_1649 at 1745.890 kb on + strand, within HP15_1649 at 1746.001 kb on + strand, within HP15_1649 at 1746.351 kb on - strand, within HP15_1649 at 1746.358 kb on + strand, within HP15_1649 at 1746.483 kb on - strand, within HP15_1649 at 1746.495 kb on + strand, within HP15_1649 at 1746.515 kb on - strand, within HP15_1649 at 1746.539 kb on - strand, within HP15_1649 at 1746.540 kb on + strand, within HP15_1649 at 1746.548 kb on - strand, within HP15_1649 at 1746.569 kb on + strand, within HP15_1649 at 1746.834 kb on + strand, within HP15_1649 at 1746.841 kb on + strand, within HP15_1649 at 1746.861 kb on + strand, within HP15_1649 at 1746.956 kb on - strand at 1747.134 kb on - strand at 1747.190 kb on - strand, within HP15_1650 at 1747.333 kb on - strand, within HP15_1650 at 1747.450 kb on - strand at 1747.450 kb on - strand at 1747.500 kb on - strand at 1747.546 kb on + strand at 1747.554 kb on - strand at 1747.573 kb on - strand, within HP15_1651 at 1747.608 kb on + strand, within HP15_1651 at 1747.638 kb on - strand, within HP15_1651 at 1747.664 kb on - strand, within HP15_1651 at 1747.695 kb on - strand, within HP15_1651 at 1747.899 kb on + strand, within HP15_1651 at 1747.993 kb on + strand, within HP15_1651 at 1748.015 kb on - strand, within HP15_1651
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml remove 1,744,829 - HP15_1647 0.41 +0.1 1,745,040 + HP15_1647 0.88 +0.1 1,745,040 + HP15_1647 0.88 -0.9 1,745,090 + -0.1 1,745,090 + +0.5 1,745,104 + +0.4 1,745,292 + HP15_1648 0.37 +0.1 1,745,292 + HP15_1648 0.37 +0.2 1,745,292 + HP15_1648 0.37 -0.1 1,745,292 + HP15_1648 0.37 +0.9 1,745,292 + HP15_1648 0.37 +0.4 1,745,297 + HP15_1648 0.38 -0.1 1,745,300 - HP15_1648 0.39 -0.9 1,745,300 - HP15_1648 0.39 -0.1 1,745,362 + HP15_1648 0.54 -0.1 1,745,367 + HP15_1648 0.56 -1.3 1,745,419 - HP15_1648 0.69 -0.5 1,745,489 + HP15_1648 0.86 -0.1 1,745,626 - -0.0 1,745,626 - +1.1 1,745,742 + +0.1 1,745,888 - HP15_1649 0.19 -0.0 1,745,890 + HP15_1649 0.19 -0.8 1,746,001 + HP15_1649 0.27 +0.1 1,746,351 - HP15_1649 0.52 +1.0 1,746,358 + HP15_1649 0.52 -0.7 1,746,483 - HP15_1649 0.61 +0.1 1,746,495 + HP15_1649 0.62 +0.5 1,746,515 - HP15_1649 0.63 -0.0 1,746,539 - HP15_1649 0.65 +2.0 1,746,540 + HP15_1649 0.65 +0.1 1,746,548 - HP15_1649 0.66 +0.8 1,746,569 + HP15_1649 0.67 -0.2 1,746,834 + HP15_1649 0.86 +0.5 1,746,841 + HP15_1649 0.87 +1.1 1,746,861 + HP15_1649 0.88 +0.7 1,746,956 - +0.1 1,747,134 - -0.0 1,747,190 - HP15_1650 0.16 +0.6 1,747,333 - HP15_1650 0.64 +0.2 1,747,450 - -0.6 1,747,450 - +0.0 1,747,500 - -0.8 1,747,546 + -0.3 1,747,554 - +0.8 1,747,573 - HP15_1651 0.11 +0.3 1,747,608 + HP15_1651 0.14 -0.1 1,747,638 - HP15_1651 0.17 -0.0 1,747,664 - HP15_1651 0.19 +0.3 1,747,695 - HP15_1651 0.22 -1.1 1,747,899 + HP15_1651 0.41 +0.2 1,747,993 + HP15_1651 0.50 +1.5 1,748,015 - HP15_1651 0.52 +0.5
Or see this region's nucleotide sequence