Strain Fitness in Marinobacter adhaerens HP15 around HP15_1059

Experiment: m.b. Polymyxin B sulfate 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1058 and HP15_1059 are separated by 252 nucleotidesHP15_1059 and HP15_1060 are separated by 111 nucleotidesHP15_1060 and HP15_1061 overlap by 4 nucleotides HP15_1058: HP15_1058 - 2,4-dienoyl-CoA reductase, at 1,080,961 to 1,083,030 _1058 HP15_1059: HP15_1059 - ATPase involved in DNA repair, at 1,083,283 to 1,084,482 _1059 HP15_1060: HP15_1060 - inorganic polyphosphate/ATP-NAD kinase, at 1,084,594 to 1,085,478 _1060 HP15_1061: HP15_1061 - diadenosine tetraphosphatase and related serine/threonine protein phosphatase, at 1,085,475 to 1,086,494 _1061 Position (kb) 1083 1084 1085Strain fitness (log2 ratio) -3 -2 -1 0 1at 1082.310 kb on - strand, within HP15_1058at 1082.336 kb on + strand, within HP15_1058at 1082.417 kb on + strand, within HP15_1058at 1082.463 kb on - strand, within HP15_1058at 1082.477 kb on + strand, within HP15_1058at 1082.521 kb on - strand, within HP15_1058at 1082.606 kb on - strand, within HP15_1058at 1082.630 kb on + strand, within HP15_1058at 1082.638 kb on - strand, within HP15_1058at 1082.687 kb on + strand, within HP15_1058at 1082.781 kb on - strand, within HP15_1058at 1082.808 kb on + strand, within HP15_1058at 1082.831 kb on - strandat 1082.839 kb on - strandat 1082.839 kb on - strandat 1082.870 kb on + strandat 1083.066 kb on - strandat 1083.146 kb on + strandat 1083.154 kb on - strandat 1083.204 kb on - strandat 1083.356 kb on + strandat 1083.356 kb on + strandat 1083.383 kb on + strandat 1083.467 kb on - strand, within HP15_1059at 1083.528 kb on - strand, within HP15_1059at 1083.595 kb on + strand, within HP15_1059at 1083.657 kb on - strand, within HP15_1059at 1083.821 kb on - strand, within HP15_1059at 1083.887 kb on - strand, within HP15_1059at 1083.941 kb on + strand, within HP15_1059at 1083.941 kb on + strand, within HP15_1059at 1083.944 kb on - strand, within HP15_1059at 1084.068 kb on + strand, within HP15_1059at 1084.100 kb on + strand, within HP15_1059at 1084.309 kb on - strand, within HP15_1059at 1084.395 kb on + strandat 1084.403 kb on - strandat 1084.408 kb on - strandat 1084.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0004 mg/ml
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1,082,310 - HP15_1058 0.65 -0.7
1,082,336 + HP15_1058 0.66 +0.1
1,082,417 + HP15_1058 0.70 -0.4
1,082,463 - HP15_1058 0.73 +0.2
1,082,477 + HP15_1058 0.73 -0.4
1,082,521 - HP15_1058 0.75 +0.2
1,082,606 - HP15_1058 0.79 -1.2
1,082,630 + HP15_1058 0.81 +0.1
1,082,638 - HP15_1058 0.81 +0.3
1,082,687 + HP15_1058 0.83 +0.4
1,082,781 - HP15_1058 0.88 +0.1
1,082,808 + HP15_1058 0.89 +0.2
1,082,831 - +0.4
1,082,839 - +1.2
1,082,839 - +0.0
1,082,870 + -0.1
1,083,066 - -0.5
1,083,146 + -2.9
1,083,154 - +0.2
1,083,204 - -0.4
1,083,356 + -0.1
1,083,356 + -0.3
1,083,383 + -0.2
1,083,467 - HP15_1059 0.15 +0.9
1,083,528 - HP15_1059 0.20 +0.4
1,083,595 + HP15_1059 0.26 -0.0
1,083,657 - HP15_1059 0.31 -0.0
1,083,821 - HP15_1059 0.45 -0.0
1,083,887 - HP15_1059 0.50 +0.3
1,083,941 + HP15_1059 0.55 +0.2
1,083,941 + HP15_1059 0.55 +0.1
1,083,944 - HP15_1059 0.55 +1.1
1,084,068 + HP15_1059 0.65 +0.8
1,084,100 + HP15_1059 0.68 +0.4
1,084,309 - HP15_1059 0.85 -0.2
1,084,395 + -0.4
1,084,403 - +0.0
1,084,408 - +0.7
1,084,484 - +0.3

Or see this region's nucleotide sequence