Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19895 and BWI76_RS19900 are separated by 72 nucleotides BWI76_RS19900 and BWI76_RS19905 are separated by 102 nucleotides
BWI76_RS19895: BWI76_RS19895 - bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase, at 4,160,763 to 4,161,827
_RS19895
BWI76_RS19900: BWI76_RS19900 - FAD:protein FMN transferase, at 4,161,900 to 4,162,952
_RS19900
BWI76_RS19905: BWI76_RS19905 - OmpK36 porin, at 4,163,055 to 4,164,173
_RS19905
Position (kb)
4161
4162
4163 Strain fitness (log2 ratio)
-1
0
1 at 4161.169 kb on + strand, within BWI76_RS19895 at 4161.170 kb on - strand, within BWI76_RS19895 at 4161.170 kb on - strand, within BWI76_RS19895 at 4162.324 kb on + strand, within BWI76_RS19900 at 4162.446 kb on + strand, within BWI76_RS19900 at 4162.783 kb on + strand, within BWI76_RS19900 at 4162.783 kb on + strand, within BWI76_RS19900 at 4162.791 kb on - strand, within BWI76_RS19900 at 4162.793 kb on + strand, within BWI76_RS19900 at 4162.882 kb on - strand at 4162.923 kb on - strand at 4162.983 kb on - strand at 4162.983 kb on - strand at 4163.006 kb on - strand at 4163.761 kb on - strand, within BWI76_RS19905 at 4163.897 kb on + strand, within BWI76_RS19905 at 4163.898 kb on - strand, within BWI76_RS19905
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,161,169 + BWI76_RS19895 0.38 -0.4 4,161,170 - BWI76_RS19895 0.38 -0.0 4,161,170 - BWI76_RS19895 0.38 +0.4 4,162,324 + BWI76_RS19900 0.40 +0.3 4,162,446 + BWI76_RS19900 0.52 -0.7 4,162,783 + BWI76_RS19900 0.84 -1.1 4,162,783 + BWI76_RS19900 0.84 +1.5 4,162,791 - BWI76_RS19900 0.85 +0.5 4,162,793 + BWI76_RS19900 0.85 -0.8 4,162,882 - -0.6 4,162,923 - -0.2 4,162,983 - -1.5 4,162,983 - -0.2 4,163,006 - +0.9 4,163,761 - BWI76_RS19905 0.63 +0.5 4,163,897 + BWI76_RS19905 0.75 -0.7 4,163,898 - BWI76_RS19905 0.75 -0.6
Or see this region's nucleotide sequence