Experiment: MoLS4 with Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nifV and DORF123 are separated by 366 nucleotides DORF123 and DVUA0019 are separated by 578 nucleotides
DVUA0016: nifV - homocitrate synthase (TIGR), at 20,468 to 21,622
nifV
DORF123: DORF123 - SEED: FIG00603348: hypothetical protein, at 21,989 to 22,207
DORF123
DVUA0019: DVUA0019 - type II DNA modification methyltransferase, putative (TIGR), at 22,786 to 24,444
DVUA0019
Position (kb) 21
22
23 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 21.026 kb on - strand, within nifV at 21.068 kb on + strand, within nifV at 21.075 kb on + strand, within nifV at 21.093 kb on - strand, within nifV at 21.211 kb on - strand, within nifV at 21.211 kb on - strand, within nifV at 21.211 kb on - strand, within nifV at 21.220 kb on + strand, within nifV at 21.331 kb on - strand, within nifV at 21.333 kb on + strand, within nifV at 21.380 kb on - strand, within nifV at 21.380 kb on - strand, within nifV at 21.418 kb on + strand, within nifV at 21.441 kb on - strand, within nifV at 21.441 kb on - strand, within nifV at 21.487 kb on - strand, within nifV at 21.504 kb on + strand, within nifV at 21.509 kb on + strand at 21.512 kb on - strand at 21.518 kb on - strand at 21.530 kb on + strand at 21.533 kb on - strand at 21.550 kb on - strand at 21.584 kb on + strand at 21.592 kb on - strand at 21.612 kb on - strand at 21.619 kb on - strand at 21.644 kb on - strand at 21.655 kb on + strand at 21.708 kb on - strand at 21.708 kb on - strand at 21.708 kb on - strand at 21.708 kb on - strand at 21.725 kb on - strand at 21.751 kb on + strand at 21.759 kb on - strand at 21.780 kb on - strand at 21.859 kb on + strand at 21.922 kb on - strand at 21.948 kb on + strand at 22.013 kb on - strand, within DORF123 at 22.013 kb on - strand, within DORF123 at 22.024 kb on - strand, within DORF123 at 22.024 kb on - strand, within DORF123 at 22.077 kb on - strand, within DORF123 at 22.077 kb on - strand, within DORF123 at 22.077 kb on - strand, within DORF123 at 22.079 kb on - strand, within DORF123 at 22.084 kb on + strand, within DORF123 at 22.084 kb on + strand, within DORF123 at 22.092 kb on - strand, within DORF123 at 22.101 kb on + strand, within DORF123 at 22.220 kb on - strand at 22.226 kb on + strand at 22.226 kb on - strand at 22.233 kb on - strand at 22.234 kb on - strand at 22.363 kb on + strand at 22.386 kb on - strand at 22.397 kb on + strand at 22.397 kb on - strand at 22.405 kb on - strand at 22.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Urea (N) remove 21,026 - nifV DVUA0016 0.48 -3.5 21,068 + nifV DVUA0016 0.52 -2.2 21,075 + nifV DVUA0016 0.53 -5.2 21,093 - nifV DVUA0016 0.54 -3.8 21,211 - nifV DVUA0016 0.64 -4.4 21,211 - nifV DVUA0016 0.64 -2.0 21,211 - nifV DVUA0016 0.64 -2.2 21,220 + nifV DVUA0016 0.65 -4.2 21,331 - nifV DVUA0016 0.75 -2.0 21,333 + nifV DVUA0016 0.75 -4.0 21,380 - nifV DVUA0016 0.79 -3.2 21,380 - nifV DVUA0016 0.79 -3.7 21,418 + nifV DVUA0016 0.82 -1.4 21,441 - nifV DVUA0016 0.84 +0.9 21,441 - nifV DVUA0016 0.84 -3.4 21,487 - nifV DVUA0016 0.88 -3.3 21,504 + nifV DVUA0016 0.90 -0.7 21,509 + -2.6 21,512 - -4.2 21,518 - -3.2 21,530 + +0.6 21,533 - -3.2 21,550 - +0.9 21,584 + -4.5 21,592 - +0.5 21,612 - -1.4 21,619 - -1.1 21,644 - -0.4 21,655 + -1.0 21,708 - -0.2 21,708 - -0.4 21,708 - +0.1 21,708 - +0.3 21,725 - +1.2 21,751 + -0.0 21,759 - -0.6 21,780 - -1.8 21,859 + -0.1 21,922 - +2.5 21,948 + -0.1 22,013 - DORF123 0.11 +0.1 22,013 - DORF123 0.11 +0.2 22,024 - DORF123 0.16 -2.8 22,024 - DORF123 0.16 -0.9 22,077 - DORF123 0.40 +0.1 22,077 - DORF123 0.40 -0.1 22,077 - DORF123 0.40 +0.3 22,079 - DORF123 0.41 -0.2 22,084 + DORF123 0.43 +0.1 22,084 + DORF123 0.43 +0.4 22,092 - DORF123 0.47 -0.5 22,101 + DORF123 0.51 -1.0 22,220 - +0.3 22,226 + -0.1 22,226 - +0.5 22,233 - -0.3 22,234 - +0.1 22,363 + -2.0 22,386 - +1.1 22,397 + +0.0 22,397 - -0.2 22,405 - +0.3 22,659 - +0.5
Or see this region's nucleotide sequence