Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.777.1 and Xcc-8004.778.1 overlap by 4 nucleotides Xcc-8004.778.1 and Xcc-8004.779.1 are separated by 2 nucleotides
Xcc-8004.777.1: Xcc-8004.777.1 - FIG01211805: hypothetical protein, at 722,239 to 723,387
Xcc-8004.777.1
Xcc-8004.778.1: Xcc-8004.778.1 - FIG01214273: hypothetical protein, at 723,384 to 724,127
Xcc-8004.778.1
Xcc-8004.779.1: Xcc-8004.779.1 - Glucosyl-3-phosphoglycerate synthase (EC 2.4.1.266), at 724,130 to 725,209
Xcc-8004.779.1
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 722.657 kb on + strand, within Xcc-8004.777.1 at 722.705 kb on - strand, within Xcc-8004.777.1 at 722.754 kb on - strand, within Xcc-8004.777.1 at 722.987 kb on + strand, within Xcc-8004.777.1 at 722.987 kb on + strand, within Xcc-8004.777.1 at 722.988 kb on - strand, within Xcc-8004.777.1 at 722.988 kb on - strand, within Xcc-8004.777.1 at 723.137 kb on + strand, within Xcc-8004.777.1 at 723.203 kb on + strand, within Xcc-8004.777.1 at 723.398 kb on - strand at 723.406 kb on - strand at 723.430 kb on + strand at 723.430 kb on + strand at 723.430 kb on + strand at 723.430 kb on + strand at 723.431 kb on - strand at 723.946 kb on + strand, within Xcc-8004.778.1 at 723.946 kb on + strand, within Xcc-8004.778.1 at 723.997 kb on - strand, within Xcc-8004.778.1 at 723.997 kb on - strand, within Xcc-8004.778.1 at 724.268 kb on + strand, within Xcc-8004.779.1 at 724.288 kb on + strand, within Xcc-8004.779.1 at 724.288 kb on + strand, within Xcc-8004.779.1 at 724.289 kb on - strand, within Xcc-8004.779.1 at 724.289 kb on - strand, within Xcc-8004.779.1 at 724.292 kb on + strand, within Xcc-8004.779.1 at 724.292 kb on + strand, within Xcc-8004.779.1 at 724.293 kb on - strand, within Xcc-8004.779.1 at 724.386 kb on + strand, within Xcc-8004.779.1 at 724.503 kb on + strand, within Xcc-8004.779.1 at 724.504 kb on - strand, within Xcc-8004.779.1 at 724.564 kb on - strand, within Xcc-8004.779.1 at 724.585 kb on - strand, within Xcc-8004.779.1 at 724.632 kb on + strand, within Xcc-8004.779.1 at 724.723 kb on - strand, within Xcc-8004.779.1 at 724.833 kb on + strand, within Xcc-8004.779.1 at 724.834 kb on - strand, within Xcc-8004.779.1 at 724.884 kb on + strand, within Xcc-8004.779.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 722,657 + Xcc-8004.777.1 0.36 +0.3 722,705 - Xcc-8004.777.1 0.41 -0.9 722,754 - Xcc-8004.777.1 0.45 +1.0 722,987 + Xcc-8004.777.1 0.65 +0.1 722,987 + Xcc-8004.777.1 0.65 +0.1 722,988 - Xcc-8004.777.1 0.65 -1.9 722,988 - Xcc-8004.777.1 0.65 +1.2 723,137 + Xcc-8004.777.1 0.78 -1.6 723,203 + Xcc-8004.777.1 0.84 -0.5 723,398 - -0.3 723,406 - +0.9 723,430 + -1.5 723,430 + +2.3 723,430 + +0.3 723,430 + +1.1 723,431 - -1.1 723,946 + Xcc-8004.778.1 0.76 -3.3 723,946 + Xcc-8004.778.1 0.76 -1.1 723,997 - Xcc-8004.778.1 0.82 +0.6 723,997 - Xcc-8004.778.1 0.82 -2.4 724,268 + Xcc-8004.779.1 0.13 -1.2 724,288 + Xcc-8004.779.1 0.15 -0.7 724,288 + Xcc-8004.779.1 0.15 -0.4 724,289 - Xcc-8004.779.1 0.15 -0.7 724,289 - Xcc-8004.779.1 0.15 -1.4 724,292 + Xcc-8004.779.1 0.15 +1.3 724,292 + Xcc-8004.779.1 0.15 +0.8 724,293 - Xcc-8004.779.1 0.15 +0.3 724,386 + Xcc-8004.779.1 0.24 +0.3 724,503 + Xcc-8004.779.1 0.35 -0.9 724,504 - Xcc-8004.779.1 0.35 +1.1 724,564 - Xcc-8004.779.1 0.40 -0.5 724,585 - Xcc-8004.779.1 0.42 +1.2 724,632 + Xcc-8004.779.1 0.46 +0.6 724,723 - Xcc-8004.779.1 0.55 -0.0 724,833 + Xcc-8004.779.1 0.65 +1.2 724,834 - Xcc-8004.779.1 0.65 +0.6 724,884 + Xcc-8004.779.1 0.70 +0.5
Or see this region's nucleotide sequence