Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.698.1 and Xcc-8004.699.1 are separated by 71 nucleotides Xcc-8004.699.1 and Xcc-8004.700.1 are separated by 52 nucleotides Xcc-8004.700.1 and Xcc-8004.701.1 overlap by 47 nucleotides Xcc-8004.701.1 and Xcc-8004.702.1 are separated by 32 nucleotides
Xcc-8004.698.1: Xcc-8004.698.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 647,598 to 650,552
Xcc-8004.698.1
Xcc-8004.699.1: Xcc-8004.699.1 - hypothetical protein, at 650,624 to 651,982
Xcc-8004.699.1
Xcc-8004.700.1: Xcc-8004.700.1 - FIG01212836: hypothetical protein, at 652,035 to 652,166
Xcc-8004.700.1
Xcc-8004.701.1: Xcc-8004.701.1 - Mobile element protein, at 652,120 to 652,386
Xcc-8004.701.1
Xcc-8004.702.1: Xcc-8004.702.1 - Mobile element protein, at 652,419 to 653,252
Xcc-8004.702.1
Position (kb) 650
651
652 Strain fitness (log2 ratio) -2
-1
0
1
2 at 649.650 kb on + strand, within Xcc-8004.698.1 at 649.653 kb on + strand, within Xcc-8004.698.1 at 649.666 kb on + strand, within Xcc-8004.698.1 at 649.767 kb on + strand, within Xcc-8004.698.1 at 650.064 kb on + strand, within Xcc-8004.698.1 at 650.098 kb on - strand, within Xcc-8004.698.1 at 650.199 kb on + strand, within Xcc-8004.698.1 at 650.200 kb on - strand, within Xcc-8004.698.1 at 650.368 kb on - strand at 650.451 kb on + strand at 650.472 kb on + strand at 650.472 kb on + strand at 650.472 kb on + strand at 650.473 kb on - strand at 650.487 kb on + strand at 650.488 kb on - strand at 650.543 kb on + strand at 650.544 kb on - strand at 650.856 kb on + strand, within Xcc-8004.699.1 at 650.894 kb on + strand, within Xcc-8004.699.1 at 651.008 kb on + strand, within Xcc-8004.699.1 at 651.158 kb on + strand, within Xcc-8004.699.1 at 651.158 kb on + strand, within Xcc-8004.699.1 at 651.158 kb on + strand, within Xcc-8004.699.1 at 651.158 kb on + strand, within Xcc-8004.699.1 at 651.295 kb on - strand, within Xcc-8004.699.1 at 651.396 kb on + strand, within Xcc-8004.699.1 at 651.584 kb on - strand, within Xcc-8004.699.1 at 651.584 kb on - strand, within Xcc-8004.699.1 at 651.632 kb on + strand, within Xcc-8004.699.1 at 651.634 kb on + strand, within Xcc-8004.699.1 at 651.634 kb on + strand, within Xcc-8004.699.1 at 651.683 kb on + strand, within Xcc-8004.699.1 at 651.684 kb on - strand, within Xcc-8004.699.1 at 651.684 kb on - strand, within Xcc-8004.699.1 at 651.740 kb on + strand, within Xcc-8004.699.1 at 651.783 kb on + strand, within Xcc-8004.699.1 at 651.796 kb on + strand, within Xcc-8004.699.1 at 651.796 kb on + strand, within Xcc-8004.699.1 at 651.796 kb on + strand, within Xcc-8004.699.1 at 651.796 kb on + strand, within Xcc-8004.699.1 at 651.797 kb on - strand, within Xcc-8004.699.1 at 651.988 kb on + strand at 651.988 kb on + strand at 651.988 kb on + strand at 651.988 kb on + strand at 651.989 kb on - strand at 651.989 kb on - strand at 651.990 kb on + strand at 652.036 kb on + strand at 652.036 kb on + strand at 652.037 kb on - strand at 652.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 649,650 + Xcc-8004.698.1 0.69 -2.0 649,653 + Xcc-8004.698.1 0.70 -0.8 649,666 + Xcc-8004.698.1 0.70 -0.3 649,767 + Xcc-8004.698.1 0.73 -1.3 650,064 + Xcc-8004.698.1 0.83 +1.4 650,098 - Xcc-8004.698.1 0.85 +1.7 650,199 + Xcc-8004.698.1 0.88 -0.8 650,200 - Xcc-8004.698.1 0.88 -1.6 650,368 - -0.4 650,451 + -0.2 650,472 + +0.3 650,472 + +1.3 650,472 + -0.6 650,473 - +1.7 650,487 + -0.7 650,488 - +0.8 650,543 + +0.9 650,544 - +1.7 650,856 + Xcc-8004.699.1 0.17 +1.0 650,894 + Xcc-8004.699.1 0.20 +0.0 651,008 + Xcc-8004.699.1 0.28 -1.5 651,158 + Xcc-8004.699.1 0.39 -0.7 651,158 + Xcc-8004.699.1 0.39 +0.7 651,158 + Xcc-8004.699.1 0.39 -0.4 651,158 + Xcc-8004.699.1 0.39 -2.0 651,295 - Xcc-8004.699.1 0.49 -0.6 651,396 + Xcc-8004.699.1 0.57 +0.3 651,584 - Xcc-8004.699.1 0.71 -0.2 651,584 - Xcc-8004.699.1 0.71 +0.8 651,632 + Xcc-8004.699.1 0.74 -1.1 651,634 + Xcc-8004.699.1 0.74 -0.0 651,634 + Xcc-8004.699.1 0.74 -0.7 651,683 + Xcc-8004.699.1 0.78 -0.2 651,684 - Xcc-8004.699.1 0.78 -1.4 651,684 - Xcc-8004.699.1 0.78 -2.3 651,740 + Xcc-8004.699.1 0.82 +0.5 651,783 + Xcc-8004.699.1 0.85 -0.0 651,796 + Xcc-8004.699.1 0.86 -0.1 651,796 + Xcc-8004.699.1 0.86 +0.1 651,796 + Xcc-8004.699.1 0.86 +1.0 651,796 + Xcc-8004.699.1 0.86 +2.4 651,797 - Xcc-8004.699.1 0.86 -2.4 651,988 + -1.4 651,988 + +0.1 651,988 + +1.2 651,988 + +1.0 651,989 - +0.3 651,989 - +0.9 651,990 + +0.2 652,036 + -0.1 652,036 + -0.3 652,037 - -0.2 652,037 - +1.9
Or see this region's nucleotide sequence