Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5276.1 and Xcc-8004.5277.1 are separated by 24 nucleotides Xcc-8004.5277.1 and Xcc-8004.5278.1 overlap by 4 nucleotides Xcc-8004.5278.1 and Xcc-8004.5280.1 are separated by 36 nucleotides Xcc-8004.5280.1 and Xcc-8004.5281.1 are separated by 7 nucleotides
Xcc-8004.5276.1: Xcc-8004.5276.1 - FIG01211278: hypothetical protein, at 5,016,610 to 5,017,728
Xcc-8004.5276.1
Xcc-8004.5277.1: Xcc-8004.5277.1 - hypothetical protein, at 5,017,753 to 5,017,917
Xcc-8004.5277.1
Xcc-8004.5278.1: Xcc-8004.5278.1 - FIG01210967: hypothetical protein, at 5,017,914 to 5,018,201
Xcc-8004.5278.1
Xcc-8004.5280.1: Xcc-8004.5280.1 - hypothetical protein, at 5,018,238 to 5,018,357
Xcc-8004.5280.1
Xcc-8004.5281.1: Xcc-8004.5281.1 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 5,018,365 to 5,019,180
Xcc-8004.5281.1
Position (kb) 5018
5019
5020 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5017.430 kb on + strand, within Xcc-8004.5276.1 at 5017.431 kb on - strand, within Xcc-8004.5276.1 at 5017.617 kb on + strand at 5017.658 kb on - strand at 5017.658 kb on - strand at 5017.842 kb on + strand, within Xcc-8004.5277.1 at 5017.842 kb on + strand, within Xcc-8004.5277.1 at 5017.843 kb on - strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.888 kb on + strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.889 kb on - strand, within Xcc-8004.5277.1 at 5017.908 kb on + strand at 5017.908 kb on + strand at 5017.975 kb on - strand, within Xcc-8004.5278.1 at 5017.975 kb on - strand, within Xcc-8004.5278.1 at 5017.975 kb on - strand, within Xcc-8004.5278.1 at 5017.975 kb on - strand, within Xcc-8004.5278.1 at 5017.975 kb on - strand, within Xcc-8004.5278.1 at 5017.993 kb on + strand, within Xcc-8004.5278.1 at 5017.993 kb on + strand, within Xcc-8004.5278.1 at 5017.994 kb on - strand, within Xcc-8004.5278.1 at 5017.994 kb on - strand, within Xcc-8004.5278.1 at 5017.994 kb on - strand, within Xcc-8004.5278.1 at 5017.994 kb on - strand, within Xcc-8004.5278.1 at 5018.015 kb on + strand, within Xcc-8004.5278.1 at 5018.015 kb on + strand, within Xcc-8004.5278.1 at 5018.015 kb on + strand, within Xcc-8004.5278.1 at 5018.016 kb on - strand, within Xcc-8004.5278.1 at 5018.016 kb on - strand, within Xcc-8004.5278.1 at 5018.016 kb on - strand, within Xcc-8004.5278.1 at 5018.016 kb on - strand, within Xcc-8004.5278.1 at 5018.083 kb on - strand, within Xcc-8004.5278.1 at 5018.083 kb on - strand, within Xcc-8004.5278.1 at 5018.083 kb on - strand, within Xcc-8004.5278.1 at 5018.083 kb on - strand, within Xcc-8004.5278.1 at 5018.083 kb on - strand, within Xcc-8004.5278.1 at 5018.170 kb on + strand, within Xcc-8004.5278.1 at 5018.183 kb on + strand at 5018.242 kb on + strand at 5018.242 kb on + strand at 5018.242 kb on + strand at 5018.242 kb on + strand at 5018.243 kb on - strand at 5018.243 kb on - strand at 5018.243 kb on - strand at 5018.243 kb on - strand at 5018.243 kb on - strand at 5018.243 kb on - strand at 5018.243 kb on - strand at 5018.243 kb on - strand at 5018.295 kb on + strand, within Xcc-8004.5280.1 at 5018.295 kb on + strand, within Xcc-8004.5280.1 at 5018.296 kb on - strand, within Xcc-8004.5280.1 at 5018.296 kb on - strand, within Xcc-8004.5280.1 at 5018.307 kb on - strand, within Xcc-8004.5280.1 at 5018.315 kb on - strand, within Xcc-8004.5280.1 at 5018.351 kb on + strand at 5018.351 kb on + strand at 5018.366 kb on + strand at 5018.367 kb on - strand at 5018.465 kb on + strand, within Xcc-8004.5281.1 at 5018.465 kb on + strand, within Xcc-8004.5281.1 at 5018.465 kb on + strand, within Xcc-8004.5281.1 at 5018.465 kb on + strand, within Xcc-8004.5281.1 at 5018.465 kb on + strand, within Xcc-8004.5281.1 at 5018.466 kb on - strand, within Xcc-8004.5281.1 at 5018.466 kb on - strand, within Xcc-8004.5281.1 at 5018.466 kb on - strand, within Xcc-8004.5281.1 at 5018.466 kb on - strand, within Xcc-8004.5281.1 at 5018.466 kb on - strand, within Xcc-8004.5281.1 at 5018.466 kb on - strand, within Xcc-8004.5281.1 at 5018.490 kb on - strand, within Xcc-8004.5281.1 at 5018.552 kb on + strand, within Xcc-8004.5281.1 at 5018.552 kb on + strand, within Xcc-8004.5281.1 at 5018.552 kb on + strand, within Xcc-8004.5281.1 at 5018.552 kb on + strand, within Xcc-8004.5281.1 at 5018.553 kb on - strand, within Xcc-8004.5281.1 at 5018.553 kb on - strand, within Xcc-8004.5281.1 at 5018.663 kb on + strand, within Xcc-8004.5281.1 at 5018.663 kb on + strand, within Xcc-8004.5281.1 at 5018.663 kb on + strand, within Xcc-8004.5281.1 at 5018.663 kb on + strand, within Xcc-8004.5281.1 at 5018.664 kb on - strand, within Xcc-8004.5281.1 at 5018.664 kb on - strand, within Xcc-8004.5281.1 at 5018.664 kb on - strand, within Xcc-8004.5281.1 at 5018.667 kb on + strand, within Xcc-8004.5281.1 at 5018.667 kb on + strand, within Xcc-8004.5281.1 at 5018.667 kb on + strand, within Xcc-8004.5281.1 at 5018.667 kb on + strand, within Xcc-8004.5281.1 at 5018.667 kb on + strand, within Xcc-8004.5281.1 at 5018.668 kb on - strand, within Xcc-8004.5281.1 at 5018.668 kb on - strand, within Xcc-8004.5281.1 at 5018.668 kb on - strand, within Xcc-8004.5281.1 at 5018.668 kb on - strand, within Xcc-8004.5281.1 at 5018.668 kb on - strand, within Xcc-8004.5281.1 at 5018.750 kb on + strand, within Xcc-8004.5281.1 at 5018.760 kb on + strand, within Xcc-8004.5281.1 at 5018.773 kb on + strand, within Xcc-8004.5281.1 at 5018.774 kb on - strand, within Xcc-8004.5281.1 at 5018.774 kb on - strand, within Xcc-8004.5281.1 at 5018.774 kb on - strand, within Xcc-8004.5281.1 at 5018.830 kb on + strand, within Xcc-8004.5281.1 at 5018.831 kb on - strand, within Xcc-8004.5281.1 at 5018.922 kb on + strand, within Xcc-8004.5281.1 at 5018.922 kb on + strand, within Xcc-8004.5281.1 at 5018.923 kb on - strand, within Xcc-8004.5281.1 at 5018.923 kb on - strand, within Xcc-8004.5281.1 at 5018.959 kb on + strand, within Xcc-8004.5281.1 at 5018.959 kb on + strand, within Xcc-8004.5281.1 at 5018.960 kb on - strand, within Xcc-8004.5281.1 at 5018.960 kb on - strand, within Xcc-8004.5281.1 at 5018.960 kb on - strand, within Xcc-8004.5281.1 at 5018.960 kb on - strand, within Xcc-8004.5281.1 at 5018.960 kb on - strand, within Xcc-8004.5281.1 at 5018.960 kb on - strand, within Xcc-8004.5281.1 at 5019.005 kb on + strand, within Xcc-8004.5281.1 at 5019.006 kb on - strand, within Xcc-8004.5281.1 at 5019.006 kb on - strand, within Xcc-8004.5281.1 at 5019.148 kb on + strand at 5019.148 kb on + strand at 5019.149 kb on - strand at 5019.149 kb on - strand at 5019.149 kb on - strand at 5019.149 kb on - strand at 5019.203 kb on - strand at 5019.205 kb on + strand at 5019.206 kb on - strand at 5019.206 kb on - strand at 5019.206 kb on - strand at 5019.262 kb on - strand at 5019.262 kb on - strand at 5019.273 kb on + strand at 5019.273 kb on + strand at 5019.273 kb on + strand at 5019.273 kb on + strand at 5019.274 kb on - strand at 5019.274 kb on - strand at 5019.274 kb on - strand at 5019.301 kb on - strand at 5019.309 kb on - strand at 5019.317 kb on + strand at 5019.318 kb on - strand at 5019.318 kb on - strand at 5019.318 kb on - strand at 5019.329 kb on + strand at 5019.330 kb on - strand at 5019.344 kb on + strand at 5019.345 kb on - strand at 5019.348 kb on - strand at 5019.411 kb on + strand at 5019.411 kb on + strand at 5019.411 kb on + strand at 5019.411 kb on + strand at 5019.411 kb on + strand at 5019.411 kb on + strand at 5019.412 kb on - strand at 5019.412 kb on - strand at 5019.412 kb on - strand at 5019.412 kb on - strand at 5019.412 kb on - strand at 5019.419 kb on + strand at 5019.419 kb on + strand at 5019.419 kb on + strand at 5019.420 kb on - strand at 5019.422 kb on + strand at 5019.423 kb on - strand at 5019.423 kb on - strand at 5019.455 kb on - strand at 5019.455 kb on - strand at 5019.455 kb on - strand at 5019.455 kb on - strand at 5019.455 kb on - strand at 5019.455 kb on - strand at 5019.455 kb on - strand at 5019.462 kb on - strand at 5019.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,017,430 + Xcc-8004.5276.1 0.73 -0.2 5,017,431 - Xcc-8004.5276.1 0.73 +0.3 5,017,617 + +1.9 5,017,658 - -0.0 5,017,658 - +0.3 5,017,842 + Xcc-8004.5277.1 0.54 +1.5 5,017,842 + Xcc-8004.5277.1 0.54 -0.0 5,017,843 - Xcc-8004.5277.1 0.55 +0.1 5,017,888 + Xcc-8004.5277.1 0.82 +0.9 5,017,888 + Xcc-8004.5277.1 0.82 -1.1 5,017,888 + Xcc-8004.5277.1 0.82 -1.2 5,017,888 + Xcc-8004.5277.1 0.82 +0.4 5,017,888 + Xcc-8004.5277.1 0.82 +0.5 5,017,888 + Xcc-8004.5277.1 0.82 -0.5 5,017,888 + Xcc-8004.5277.1 0.82 -0.9 5,017,888 + Xcc-8004.5277.1 0.82 -0.3 5,017,888 + Xcc-8004.5277.1 0.82 -0.6 5,017,888 + Xcc-8004.5277.1 0.82 +0.1 5,017,889 - Xcc-8004.5277.1 0.82 +0.2 5,017,889 - Xcc-8004.5277.1 0.82 -0.0 5,017,889 - Xcc-8004.5277.1 0.82 -0.5 5,017,889 - Xcc-8004.5277.1 0.82 -1.5 5,017,889 - Xcc-8004.5277.1 0.82 -0.6 5,017,889 - Xcc-8004.5277.1 0.82 +1.2 5,017,889 - Xcc-8004.5277.1 0.82 +1.5 5,017,889 - Xcc-8004.5277.1 0.82 +1.7 5,017,889 - Xcc-8004.5277.1 0.82 +0.5 5,017,889 - Xcc-8004.5277.1 0.82 +0.0 5,017,889 - Xcc-8004.5277.1 0.82 -0.4 5,017,889 - Xcc-8004.5277.1 0.82 +0.5 5,017,908 + +0.7 5,017,908 + +1.8 5,017,975 - Xcc-8004.5278.1 0.21 +0.2 5,017,975 - Xcc-8004.5278.1 0.21 -0.9 5,017,975 - Xcc-8004.5278.1 0.21 +0.2 5,017,975 - Xcc-8004.5278.1 0.21 +2.2 5,017,975 - Xcc-8004.5278.1 0.21 -1.5 5,017,993 + Xcc-8004.5278.1 0.27 +1.5 5,017,993 + Xcc-8004.5278.1 0.27 -0.3 5,017,994 - Xcc-8004.5278.1 0.28 +1.0 5,017,994 - Xcc-8004.5278.1 0.28 -2.6 5,017,994 - Xcc-8004.5278.1 0.28 +2.0 5,017,994 - Xcc-8004.5278.1 0.28 -0.2 5,018,015 + Xcc-8004.5278.1 0.35 -0.1 5,018,015 + Xcc-8004.5278.1 0.35 -1.6 5,018,015 + Xcc-8004.5278.1 0.35 -0.9 5,018,016 - Xcc-8004.5278.1 0.35 +0.0 5,018,016 - Xcc-8004.5278.1 0.35 +0.6 5,018,016 - Xcc-8004.5278.1 0.35 +0.6 5,018,016 - Xcc-8004.5278.1 0.35 +0.4 5,018,083 - Xcc-8004.5278.1 0.59 -0.9 5,018,083 - Xcc-8004.5278.1 0.59 -0.2 5,018,083 - Xcc-8004.5278.1 0.59 -0.4 5,018,083 - Xcc-8004.5278.1 0.59 +2.1 5,018,083 - Xcc-8004.5278.1 0.59 -1.0 5,018,170 + Xcc-8004.5278.1 0.89 +1.8 5,018,183 + +0.0 5,018,242 + -0.2 5,018,242 + +1.0 5,018,242 + -0.7 5,018,242 + -0.5 5,018,243 - +0.7 5,018,243 - -1.1 5,018,243 - -1.5 5,018,243 - +0.0 5,018,243 - -0.7 5,018,243 - -0.8 5,018,243 - -0.1 5,018,243 - -1.3 5,018,295 + Xcc-8004.5280.1 0.47 -0.3 5,018,295 + Xcc-8004.5280.1 0.47 -1.3 5,018,296 - Xcc-8004.5280.1 0.48 -0.7 5,018,296 - Xcc-8004.5280.1 0.48 -1.2 5,018,307 - Xcc-8004.5280.1 0.57 -1.8 5,018,315 - Xcc-8004.5280.1 0.64 -1.3 5,018,351 + +0.2 5,018,351 + -0.1 5,018,366 + -0.2 5,018,367 - +0.6 5,018,465 + Xcc-8004.5281.1 0.12 +0.6 5,018,465 + Xcc-8004.5281.1 0.12 +0.8 5,018,465 + Xcc-8004.5281.1 0.12 -0.7 5,018,465 + Xcc-8004.5281.1 0.12 -0.2 5,018,465 + Xcc-8004.5281.1 0.12 -2.5 5,018,466 - Xcc-8004.5281.1 0.12 -0.7 5,018,466 - Xcc-8004.5281.1 0.12 -0.0 5,018,466 - Xcc-8004.5281.1 0.12 +0.5 5,018,466 - Xcc-8004.5281.1 0.12 -1.5 5,018,466 - Xcc-8004.5281.1 0.12 -1.5 5,018,466 - Xcc-8004.5281.1 0.12 +1.0 5,018,490 - Xcc-8004.5281.1 0.15 -0.3 5,018,552 + Xcc-8004.5281.1 0.23 +0.5 5,018,552 + Xcc-8004.5281.1 0.23 -0.3 5,018,552 + Xcc-8004.5281.1 0.23 -0.4 5,018,552 + Xcc-8004.5281.1 0.23 -1.0 5,018,553 - Xcc-8004.5281.1 0.23 -1.6 5,018,553 - Xcc-8004.5281.1 0.23 -0.0 5,018,663 + Xcc-8004.5281.1 0.37 -0.7 5,018,663 + Xcc-8004.5281.1 0.37 +0.3 5,018,663 + Xcc-8004.5281.1 0.37 -1.0 5,018,663 + Xcc-8004.5281.1 0.37 -0.1 5,018,664 - Xcc-8004.5281.1 0.37 +0.6 5,018,664 - Xcc-8004.5281.1 0.37 +0.7 5,018,664 - Xcc-8004.5281.1 0.37 +1.0 5,018,667 + Xcc-8004.5281.1 0.37 +0.1 5,018,667 + Xcc-8004.5281.1 0.37 -2.5 5,018,667 + Xcc-8004.5281.1 0.37 +1.4 5,018,667 + Xcc-8004.5281.1 0.37 +2.0 5,018,667 + Xcc-8004.5281.1 0.37 -0.6 5,018,668 - Xcc-8004.5281.1 0.37 +0.6 5,018,668 - Xcc-8004.5281.1 0.37 -0.7 5,018,668 - Xcc-8004.5281.1 0.37 +0.4 5,018,668 - Xcc-8004.5281.1 0.37 -2.2 5,018,668 - Xcc-8004.5281.1 0.37 +0.1 5,018,750 + Xcc-8004.5281.1 0.47 -0.7 5,018,760 + Xcc-8004.5281.1 0.48 -0.2 5,018,773 + Xcc-8004.5281.1 0.50 -0.4 5,018,774 - Xcc-8004.5281.1 0.50 +0.5 5,018,774 - Xcc-8004.5281.1 0.50 -1.9 5,018,774 - Xcc-8004.5281.1 0.50 +0.5 5,018,830 + Xcc-8004.5281.1 0.57 -0.7 5,018,831 - Xcc-8004.5281.1 0.57 -0.3 5,018,922 + Xcc-8004.5281.1 0.68 -0.6 5,018,922 + Xcc-8004.5281.1 0.68 -1.5 5,018,923 - Xcc-8004.5281.1 0.68 -0.8 5,018,923 - Xcc-8004.5281.1 0.68 -1.5 5,018,959 + Xcc-8004.5281.1 0.73 +0.5 5,018,959 + Xcc-8004.5281.1 0.73 -1.3 5,018,960 - Xcc-8004.5281.1 0.73 -3.0 5,018,960 - Xcc-8004.5281.1 0.73 +0.1 5,018,960 - Xcc-8004.5281.1 0.73 +1.7 5,018,960 - Xcc-8004.5281.1 0.73 -0.1 5,018,960 - Xcc-8004.5281.1 0.73 +0.1 5,018,960 - Xcc-8004.5281.1 0.73 +1.2 5,019,005 + Xcc-8004.5281.1 0.78 -0.7 5,019,006 - Xcc-8004.5281.1 0.79 -0.9 5,019,006 - Xcc-8004.5281.1 0.79 -0.2 5,019,148 + -1.3 5,019,148 + -0.9 5,019,149 - -0.2 5,019,149 - +0.6 5,019,149 - -1.4 5,019,149 - +0.6 5,019,203 - -0.7 5,019,205 + +1.5 5,019,206 - -0.9 5,019,206 - -0.1 5,019,206 - -0.5 5,019,262 - -1.3 5,019,262 - +1.0 5,019,273 + -1.9 5,019,273 + -1.3 5,019,273 + -0.0 5,019,273 + -0.3 5,019,274 - -0.9 5,019,274 - -0.7 5,019,274 - -0.5 5,019,301 - +0.6 5,019,309 - -0.9 5,019,317 + -0.3 5,019,318 - -1.7 5,019,318 - -1.0 5,019,318 - -0.6 5,019,329 + +0.6 5,019,330 - +0.5 5,019,344 + -1.0 5,019,345 - -0.0 5,019,348 - -0.1 5,019,411 + -0.0 5,019,411 + +0.7 5,019,411 + +0.5 5,019,411 + +1.3 5,019,411 + -0.1 5,019,411 + +0.2 5,019,412 - -0.3 5,019,412 - -0.6 5,019,412 - -1.6 5,019,412 - -1.5 5,019,412 - -0.6 5,019,419 + -0.5 5,019,419 + -1.5 5,019,419 + +0.3 5,019,420 - +0.5 5,019,422 + -2.4 5,019,423 - -1.4 5,019,423 - -0.3 5,019,455 - -0.2 5,019,455 - -2.3 5,019,455 - +0.9 5,019,455 - +1.2 5,019,455 - -2.5 5,019,455 - -0.2 5,019,455 - -3.0 5,019,462 - +1.5 5,019,462 - +0.6
Or see this region's nucleotide sequence