Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4922.1 and Xcc-8004.4923.1 are separated by 114 nucleotides Xcc-8004.4923.1 and Xcc-8004.4924.1 are separated by 375 nucleotides
Xcc-8004.4922.1: Xcc-8004.4922.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 4,682,623 to 4,683,678
Xcc-8004.4922.1
Xcc-8004.4923.1: Xcc-8004.4923.1 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 4,683,793 to 4,684,440
Xcc-8004.4923.1
Xcc-8004.4924.1: Xcc-8004.4924.1 - Uracil-DNA glycosylase, putative family 6, at 4,684,816 to 4,685,475
Xcc-8004.4924.1
Position (kb) 4683
4684
4685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4682.845 kb on - strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.168 kb on - strand, within Xcc-8004.4922.1 at 4683.168 kb on - strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.425 kb on + strand, within Xcc-8004.4922.1 at 4683.425 kb on + strand, within Xcc-8004.4922.1 at 4683.426 kb on - strand, within Xcc-8004.4922.1 at 4683.426 kb on - strand, within Xcc-8004.4922.1 at 4683.426 kb on - strand, within Xcc-8004.4922.1 at 4683.709 kb on + strand at 4683.709 kb on + strand at 4683.709 kb on + strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.733 kb on + strand at 4683.734 kb on - strand at 4683.734 kb on - strand at 4683.734 kb on - strand at 4683.734 kb on - strand at 4683.735 kb on + strand at 4683.735 kb on + strand at 4683.735 kb on + strand at 4683.735 kb on + strand at 4683.736 kb on - strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.744 kb on + strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.746 kb on - strand at 4683.761 kb on + strand at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.965 kb on - strand, within Xcc-8004.4923.1 at 4683.965 kb on - strand, within Xcc-8004.4923.1 at 4683.965 kb on - strand, within Xcc-8004.4923.1 at 4684.538 kb on + strand at 4684.538 kb on + strand at 4684.539 kb on - strand at 4684.539 kb on - strand at 4684.539 kb on - strand at 4684.539 kb on - strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.547 kb on - strand at 4684.547 kb on - strand at 4684.547 kb on - strand at 4684.563 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.783 kb on - strand at 4684.961 kb on + strand, within Xcc-8004.4924.1 at 4684.961 kb on + strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4685.113 kb on + strand, within Xcc-8004.4924.1 at 4685.113 kb on + strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,682,845 - Xcc-8004.4922.1 0.21 +1.2 4,683,167 + Xcc-8004.4922.1 0.52 +0.1 4,683,167 + Xcc-8004.4922.1 0.52 +0.2 4,683,167 + Xcc-8004.4922.1 0.52 +0.9 4,683,167 + Xcc-8004.4922.1 0.52 -1.4 4,683,167 + Xcc-8004.4922.1 0.52 +0.3 4,683,167 + Xcc-8004.4922.1 0.52 -0.0 4,683,168 - Xcc-8004.4922.1 0.52 +0.1 4,683,168 - Xcc-8004.4922.1 0.52 +0.5 4,683,350 + Xcc-8004.4922.1 0.69 +0.8 4,683,350 + Xcc-8004.4922.1 0.69 +0.5 4,683,350 + Xcc-8004.4922.1 0.69 +0.7 4,683,350 + Xcc-8004.4922.1 0.69 +0.5 4,683,350 + Xcc-8004.4922.1 0.69 -0.7 4,683,350 + Xcc-8004.4922.1 0.69 -0.1 4,683,351 - Xcc-8004.4922.1 0.69 -0.5 4,683,351 - Xcc-8004.4922.1 0.69 -0.0 4,683,351 - Xcc-8004.4922.1 0.69 -0.9 4,683,351 - Xcc-8004.4922.1 0.69 -0.6 4,683,351 - Xcc-8004.4922.1 0.69 -1.0 4,683,351 - Xcc-8004.4922.1 0.69 -0.8 4,683,351 - Xcc-8004.4922.1 0.69 +0.5 4,683,425 + Xcc-8004.4922.1 0.76 -0.2 4,683,425 + Xcc-8004.4922.1 0.76 -1.3 4,683,426 - Xcc-8004.4922.1 0.76 -1.6 4,683,426 - Xcc-8004.4922.1 0.76 +0.9 4,683,426 - Xcc-8004.4922.1 0.76 +0.7 4,683,709 + +0.7 4,683,709 + -0.5 4,683,709 + +0.3 4,683,710 - +0.5 4,683,710 - +0.3 4,683,710 - -0.2 4,683,710 - -1.5 4,683,710 - -0.7 4,683,711 + -1.0 4,683,711 + -0.3 4,683,711 + -1.1 4,683,711 + +1.2 4,683,711 + +1.5 4,683,711 + +0.4 4,683,711 + -1.9 4,683,711 + +0.5 4,683,711 + -0.1 4,683,711 + +0.0 4,683,711 + -1.7 4,683,712 - -2.8 4,683,712 - +0.3 4,683,712 - +0.5 4,683,712 - -0.1 4,683,712 - +0.0 4,683,712 - -2.5 4,683,733 + -0.6 4,683,734 - +1.1 4,683,734 - -0.0 4,683,734 - +0.2 4,683,734 - -0.7 4,683,735 + +1.2 4,683,735 + +0.9 4,683,735 + +1.0 4,683,735 + -0.7 4,683,736 - -0.5 4,683,743 + +1.2 4,683,743 + +2.0 4,683,743 + +0.8 4,683,743 + -1.2 4,683,743 + +1.4 4,683,743 + +0.2 4,683,743 + -1.5 4,683,744 + +0.3 4,683,744 - -0.6 4,683,744 - -1.8 4,683,744 - -0.3 4,683,744 - -0.8 4,683,744 - +1.5 4,683,744 - -0.5 4,683,746 - -0.8 4,683,761 + -0.2 4,683,964 + Xcc-8004.4923.1 0.26 -1.8 4,683,964 + Xcc-8004.4923.1 0.26 -0.7 4,683,964 + Xcc-8004.4923.1 0.26 -2.1 4,683,964 + Xcc-8004.4923.1 0.26 +0.3 4,683,965 - Xcc-8004.4923.1 0.27 +0.1 4,683,965 - Xcc-8004.4923.1 0.27 +1.4 4,683,965 - Xcc-8004.4923.1 0.27 +1.6 4,684,538 + -0.0 4,684,538 + -1.0 4,684,539 - -0.3 4,684,539 - -0.2 4,684,539 - -0.5 4,684,539 - -1.4 4,684,546 + -0.5 4,684,546 + -1.6 4,684,546 + -1.1 4,684,546 + -0.3 4,684,546 + +0.2 4,684,547 - +0.6 4,684,547 - -2.0 4,684,547 - +0.3 4,684,563 + +0.1 4,684,742 + -1.2 4,684,742 + +1.1 4,684,742 + +0.3 4,684,742 + -2.8 4,684,742 + +0.2 4,684,742 + -1.9 4,684,742 + +1.1 4,684,742 + -0.1 4,684,742 + +0.7 4,684,742 + -0.5 4,684,742 + -0.6 4,684,742 + -1.0 4,684,743 - -0.5 4,684,743 - +4.5 4,684,743 - -0.1 4,684,743 - +0.9 4,684,743 - +0.2 4,684,743 - -1.8 4,684,743 - -1.7 4,684,743 - +1.3 4,684,743 - -1.3 4,684,743 - +0.5 4,684,783 - +0.6 4,684,961 + Xcc-8004.4924.1 0.22 +0.4 4,684,961 + Xcc-8004.4924.1 0.22 -3.6 4,684,962 - Xcc-8004.4924.1 0.22 -0.2 4,684,962 - Xcc-8004.4924.1 0.22 +1.0 4,684,962 - Xcc-8004.4924.1 0.22 -1.3 4,684,962 - Xcc-8004.4924.1 0.22 +0.1 4,685,113 + Xcc-8004.4924.1 0.45 -0.3 4,685,113 + Xcc-8004.4924.1 0.45 +0.3 4,685,114 - Xcc-8004.4924.1 0.45 -1.8 4,685,114 - Xcc-8004.4924.1 0.45 +0.3 4,685,114 - Xcc-8004.4924.1 0.45 +0.5 4,685,114 - Xcc-8004.4924.1 0.45 +2.8 4,685,114 - Xcc-8004.4924.1 0.45 +1.2
Or see this region's nucleotide sequence