Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4817.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4815.1 and Xcc-8004.4817.1 overlap by 4 nucleotidesXcc-8004.4817.1 and Xcc-8004.4818.1 are separated by 163 nucleotidesXcc-8004.4818.1 and Xcc-8004.4819.1 overlap by 4 nucleotides Xcc-8004.4815.1: Xcc-8004.4815.1 - probable exported protein STY2149, at 4,581,867 to 4,583,276 Xcc-8004.4815.1 Xcc-8004.4817.1: Xcc-8004.4817.1 - L-alanine-DL-glutamate epimerase, at 4,583,273 to 4,584,367 Xcc-8004.4817.1 Xcc-8004.4818.1: Xcc-8004.4818.1 - Gll0911 protein, at 4,584,531 to 4,585,307 Xcc-8004.4818.1 Xcc-8004.4819.1: Xcc-8004.4819.1 - Amino acid permease, at 4,585,304 to 4,586,605 Xcc-8004.4819.1 Position (kb) 4583 4584 4585Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4582.287 kb on + strand, within Xcc-8004.4815.1at 4582.287 kb on + strand, within Xcc-8004.4815.1at 4582.287 kb on + strand, within Xcc-8004.4815.1at 4582.288 kb on - strand, within Xcc-8004.4815.1at 4582.343 kb on - strand, within Xcc-8004.4815.1at 4582.343 kb on - strand, within Xcc-8004.4815.1at 4582.395 kb on + strand, within Xcc-8004.4815.1at 4582.467 kb on + strand, within Xcc-8004.4815.1at 4582.467 kb on + strand, within Xcc-8004.4815.1at 4582.467 kb on + strand, within Xcc-8004.4815.1at 4582.468 kb on - strand, within Xcc-8004.4815.1at 4582.527 kb on + strand, within Xcc-8004.4815.1at 4582.528 kb on - strand, within Xcc-8004.4815.1at 4582.581 kb on + strand, within Xcc-8004.4815.1at 4582.699 kb on - strand, within Xcc-8004.4815.1at 4582.699 kb on - strand, within Xcc-8004.4815.1at 4582.867 kb on - strand, within Xcc-8004.4815.1at 4583.049 kb on + strand, within Xcc-8004.4815.1at 4583.049 kb on + strand, within Xcc-8004.4815.1at 4583.050 kb on - strand, within Xcc-8004.4815.1at 4583.050 kb on - strand, within Xcc-8004.4815.1at 4583.050 kb on - strand, within Xcc-8004.4815.1at 4583.050 kb on - strand, within Xcc-8004.4815.1at 4583.050 kb on - strand, within Xcc-8004.4815.1at 4583.050 kb on - strand, within Xcc-8004.4815.1at 4583.065 kb on + strand, within Xcc-8004.4815.1at 4583.065 kb on + strand, within Xcc-8004.4815.1at 4583.065 kb on + strand, within Xcc-8004.4815.1at 4583.065 kb on + strand, within Xcc-8004.4815.1at 4583.065 kb on + strand, within Xcc-8004.4815.1at 4583.065 kb on + strand, within Xcc-8004.4815.1at 4583.065 kb on + strand, within Xcc-8004.4815.1at 4583.066 kb on - strand, within Xcc-8004.4815.1at 4583.066 kb on - strand, within Xcc-8004.4815.1at 4583.066 kb on - strand, within Xcc-8004.4815.1at 4583.066 kb on - strand, within Xcc-8004.4815.1at 4583.066 kb on - strand, within Xcc-8004.4815.1at 4583.066 kb on - strand, within Xcc-8004.4815.1at 4583.373 kb on + strandat 4583.373 kb on + strandat 4583.374 kb on - strandat 4583.374 kb on - strandat 4583.374 kb on - strandat 4583.527 kb on - strand, within Xcc-8004.4817.1at 4583.594 kb on + strand, within Xcc-8004.4817.1at 4583.595 kb on - strand, within Xcc-8004.4817.1at 4583.630 kb on + strand, within Xcc-8004.4817.1at 4583.630 kb on + strand, within Xcc-8004.4817.1at 4583.630 kb on + strand, within Xcc-8004.4817.1at 4583.630 kb on + strand, within Xcc-8004.4817.1at 4583.630 kb on + strand, within Xcc-8004.4817.1at 4583.631 kb on - strand, within Xcc-8004.4817.1at 4583.631 kb on - strand, within Xcc-8004.4817.1at 4583.631 kb on - strand, within Xcc-8004.4817.1at 4584.131 kb on + strand, within Xcc-8004.4817.1at 4584.433 kb on - strandat 4584.437 kb on + strandat 4584.437 kb on + strandat 4584.438 kb on - strandat 4584.438 kb on - strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.469 kb on - strandat 4584.469 kb on - strandat 4584.469 kb on - strandat 4584.870 kb on + strand, within Xcc-8004.4818.1at 4584.871 kb on - strand, within Xcc-8004.4818.1at 4584.924 kb on + strand, within Xcc-8004.4818.1at 4584.925 kb on - strand, within Xcc-8004.4818.1at 4584.925 kb on - strand, within Xcc-8004.4818.1at 4584.925 kb on - strand, within Xcc-8004.4818.1at 4584.954 kb on + strand, within Xcc-8004.4818.1at 4584.954 kb on + strand, within Xcc-8004.4818.1at 4584.954 kb on + strand, within Xcc-8004.4818.1at 4584.955 kb on - strand, within Xcc-8004.4818.1at 4584.955 kb on - strand, within Xcc-8004.4818.1at 4585.235 kb on - strandat 4585.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,582,287 + Xcc-8004.4815.1 0.30 -0.7
4,582,287 + Xcc-8004.4815.1 0.30 +1.0
4,582,287 + Xcc-8004.4815.1 0.30 +1.1
4,582,288 - Xcc-8004.4815.1 0.30 -0.5
4,582,343 - Xcc-8004.4815.1 0.34 +1.1
4,582,343 - Xcc-8004.4815.1 0.34 +0.1
4,582,395 + Xcc-8004.4815.1 0.37 -0.1
4,582,467 + Xcc-8004.4815.1 0.43 +0.3
4,582,467 + Xcc-8004.4815.1 0.43 +0.8
4,582,467 + Xcc-8004.4815.1 0.43 -0.0
4,582,468 - Xcc-8004.4815.1 0.43 -0.1
4,582,527 + Xcc-8004.4815.1 0.47 -0.1
4,582,528 - Xcc-8004.4815.1 0.47 -0.5
4,582,581 + Xcc-8004.4815.1 0.51 +0.0
4,582,699 - Xcc-8004.4815.1 0.59 -1.3
4,582,699 - Xcc-8004.4815.1 0.59 +0.7
4,582,867 - Xcc-8004.4815.1 0.71 +0.8
4,583,049 + Xcc-8004.4815.1 0.84 -0.1
4,583,049 + Xcc-8004.4815.1 0.84 -1.5
4,583,050 - Xcc-8004.4815.1 0.84 -0.2
4,583,050 - Xcc-8004.4815.1 0.84 -1.0
4,583,050 - Xcc-8004.4815.1 0.84 +0.7
4,583,050 - Xcc-8004.4815.1 0.84 +0.3
4,583,050 - Xcc-8004.4815.1 0.84 +0.4
4,583,050 - Xcc-8004.4815.1 0.84 -1.5
4,583,065 + Xcc-8004.4815.1 0.85 -1.1
4,583,065 + Xcc-8004.4815.1 0.85 +0.1
4,583,065 + Xcc-8004.4815.1 0.85 -0.4
4,583,065 + Xcc-8004.4815.1 0.85 +2.2
4,583,065 + Xcc-8004.4815.1 0.85 -1.9
4,583,065 + Xcc-8004.4815.1 0.85 -0.2
4,583,065 + Xcc-8004.4815.1 0.85 +1.6
4,583,066 - Xcc-8004.4815.1 0.85 -0.1
4,583,066 - Xcc-8004.4815.1 0.85 +0.4
4,583,066 - Xcc-8004.4815.1 0.85 +1.3
4,583,066 - Xcc-8004.4815.1 0.85 +1.3
4,583,066 - Xcc-8004.4815.1 0.85 -1.7
4,583,066 - Xcc-8004.4815.1 0.85 -0.7
4,583,373 + -0.1
4,583,373 + -0.6
4,583,374 - -1.2
4,583,374 - -2.5
4,583,374 - +1.2
4,583,527 - Xcc-8004.4817.1 0.23 +1.1
4,583,594 + Xcc-8004.4817.1 0.29 +1.8
4,583,595 - Xcc-8004.4817.1 0.29 +0.7
4,583,630 + Xcc-8004.4817.1 0.33 +0.5
4,583,630 + Xcc-8004.4817.1 0.33 +0.6
4,583,630 + Xcc-8004.4817.1 0.33 +1.9
4,583,630 + Xcc-8004.4817.1 0.33 +3.5
4,583,630 + Xcc-8004.4817.1 0.33 +1.1
4,583,631 - Xcc-8004.4817.1 0.33 -1.5
4,583,631 - Xcc-8004.4817.1 0.33 -1.1
4,583,631 - Xcc-8004.4817.1 0.33 +0.7
4,584,131 + Xcc-8004.4817.1 0.78 -0.5
4,584,433 - +0.2
4,584,437 + -0.1
4,584,437 + -0.1
4,584,438 - +0.6
4,584,438 - -0.4
4,584,468 + +1.8
4,584,468 + -0.7
4,584,468 + -1.1
4,584,468 + +3.5
4,584,468 + -0.6
4,584,468 + -0.7
4,584,469 - +0.0
4,584,469 - -0.0
4,584,469 - -1.0
4,584,870 + Xcc-8004.4818.1 0.44 -1.9
4,584,871 - Xcc-8004.4818.1 0.44 +0.8
4,584,924 + Xcc-8004.4818.1 0.51 -1.3
4,584,925 - Xcc-8004.4818.1 0.51 -2.6
4,584,925 - Xcc-8004.4818.1 0.51 -0.1
4,584,925 - Xcc-8004.4818.1 0.51 -0.3
4,584,954 + Xcc-8004.4818.1 0.54 +1.3
4,584,954 + Xcc-8004.4818.1 0.54 +0.8
4,584,954 + Xcc-8004.4818.1 0.54 +0.2
4,584,955 - Xcc-8004.4818.1 0.55 -1.3
4,584,955 - Xcc-8004.4818.1 0.55 -0.4
4,585,235 - -0.1
4,585,252 - -1.0

Or see this region's nucleotide sequence