Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.464.1 and Xcc-8004.465.1 are separated by 27 nucleotides Xcc-8004.465.1 and Xcc-8004.466.1 are separated by 93 nucleotides
Xcc-8004.464.1: Xcc-8004.464.1 - Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28), at 425,712 to 427,193
Xcc-8004.464.1
Xcc-8004.465.1: Xcc-8004.465.1 - Transcriptional regulator PobR, AraC family, at 427,221 to 428,117
Xcc-8004.465.1
Xcc-8004.466.1: Xcc-8004.466.1 - P-hydroxybenzoate hydroxylase (EC 1.14.13.2), at 428,211 to 429,395
Xcc-8004.466.1
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 426.285 kb on + strand, within Xcc-8004.464.1 at 426.286 kb on - strand, within Xcc-8004.464.1 at 426.286 kb on - strand, within Xcc-8004.464.1 at 426.288 kb on - strand, within Xcc-8004.464.1 at 426.331 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.570 kb on + strand, within Xcc-8004.464.1 at 426.571 kb on - strand, within Xcc-8004.464.1 at 426.819 kb on + strand, within Xcc-8004.464.1 at 426.820 kb on - strand, within Xcc-8004.464.1 at 426.820 kb on - strand, within Xcc-8004.464.1 at 426.820 kb on - strand, within Xcc-8004.464.1 at 426.951 kb on + strand, within Xcc-8004.464.1 at 426.951 kb on + strand, within Xcc-8004.464.1 at 427.137 kb on + strand at 427.137 kb on + strand at 427.138 kb on - strand at 427.138 kb on - strand at 427.138 kb on - strand at 427.466 kb on - strand, within Xcc-8004.465.1 at 427.728 kb on + strand, within Xcc-8004.465.1 at 427.812 kb on - strand, within Xcc-8004.465.1 at 427.939 kb on + strand, within Xcc-8004.465.1 at 427.940 kb on - strand, within Xcc-8004.465.1 at 428.060 kb on - strand at 428.094 kb on + strand at 428.099 kb on + strand at 428.571 kb on + strand, within Xcc-8004.466.1 at 428.571 kb on + strand, within Xcc-8004.466.1 at 428.572 kb on - strand, within Xcc-8004.466.1 at 428.667 kb on + strand, within Xcc-8004.466.1 at 428.667 kb on + strand, within Xcc-8004.466.1 at 428.667 kb on + strand, within Xcc-8004.466.1 at 428.668 kb on - strand, within Xcc-8004.466.1 at 428.748 kb on + strand, within Xcc-8004.466.1 at 428.748 kb on + strand, within Xcc-8004.466.1 at 428.809 kb on - strand, within Xcc-8004.466.1 at 428.809 kb on - strand, within Xcc-8004.466.1 at 428.871 kb on + strand, within Xcc-8004.466.1 at 428.872 kb on - strand, within Xcc-8004.466.1 at 428.872 kb on - strand, within Xcc-8004.466.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 426,285 + Xcc-8004.464.1 0.39 -1.7 426,286 - Xcc-8004.464.1 0.39 -0.7 426,286 - Xcc-8004.464.1 0.39 +1.2 426,288 - Xcc-8004.464.1 0.39 +1.6 426,331 + Xcc-8004.464.1 0.42 +1.0 426,503 + Xcc-8004.464.1 0.53 +1.0 426,503 + Xcc-8004.464.1 0.53 +0.1 426,503 + Xcc-8004.464.1 0.53 +1.6 426,570 + Xcc-8004.464.1 0.58 -1.0 426,571 - Xcc-8004.464.1 0.58 -0.4 426,819 + Xcc-8004.464.1 0.75 -0.2 426,820 - Xcc-8004.464.1 0.75 -0.3 426,820 - Xcc-8004.464.1 0.75 +0.9 426,820 - Xcc-8004.464.1 0.75 +1.8 426,951 + Xcc-8004.464.1 0.84 +3.2 426,951 + Xcc-8004.464.1 0.84 +0.9 427,137 + -2.6 427,137 + +0.5 427,138 - +0.0 427,138 - +1.6 427,138 - +2.1 427,466 - Xcc-8004.465.1 0.27 -1.4 427,728 + Xcc-8004.465.1 0.57 +0.6 427,812 - Xcc-8004.465.1 0.66 -0.1 427,939 + Xcc-8004.465.1 0.80 -1.1 427,940 - Xcc-8004.465.1 0.80 -1.1 428,060 - +0.0 428,094 + +0.7 428,099 + -0.5 428,571 + Xcc-8004.466.1 0.30 +0.3 428,571 + Xcc-8004.466.1 0.30 -0.1 428,572 - Xcc-8004.466.1 0.30 -0.1 428,667 + Xcc-8004.466.1 0.38 -0.2 428,667 + Xcc-8004.466.1 0.38 -0.2 428,667 + Xcc-8004.466.1 0.38 +0.5 428,668 - Xcc-8004.466.1 0.39 -0.4 428,748 + Xcc-8004.466.1 0.45 +0.2 428,748 + Xcc-8004.466.1 0.45 +0.1 428,809 - Xcc-8004.466.1 0.50 -0.3 428,809 - Xcc-8004.466.1 0.50 -0.7 428,871 + Xcc-8004.466.1 0.56 +0.3 428,872 - Xcc-8004.466.1 0.56 +0.6 428,872 - Xcc-8004.466.1 0.56 -1.3
Or see this region's nucleotide sequence