Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.460.1 and Xcc-8004.461.1 are separated by 347 nucleotides Xcc-8004.461.1 and Xcc-8004.462.1 are separated by 122 nucleotides Xcc-8004.462.1 and Xcc-8004.463.1 are separated by 32 nucleotides
Xcc-8004.460.1: Xcc-8004.460.1 - HDIG domain protein, at 421,872 to 423,113
Xcc-8004.460.1
Xcc-8004.461.1: Xcc-8004.461.1 - Transcriptional regulator, MarR family, at 423,461 to 424,342
Xcc-8004.461.1
Xcc-8004.462.1: Xcc-8004.462.1 - hypothetical protein, at 424,465 to 424,875
Xcc-8004.462.1
Xcc-8004.463.1: Xcc-8004.463.1 - 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-), at 424,908 to 425,675
Xcc-8004.463.1
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 422.695 kb on + strand, within Xcc-8004.460.1 at 422.695 kb on + strand, within Xcc-8004.460.1 at 422.696 kb on - strand, within Xcc-8004.460.1 at 422.745 kb on + strand, within Xcc-8004.460.1 at 422.772 kb on + strand, within Xcc-8004.460.1 at 422.772 kb on + strand, within Xcc-8004.460.1 at 422.772 kb on + strand, within Xcc-8004.460.1 at 422.860 kb on + strand, within Xcc-8004.460.1 at 422.861 kb on - strand, within Xcc-8004.460.1 at 422.877 kb on + strand, within Xcc-8004.460.1 at 422.877 kb on + strand, within Xcc-8004.460.1 at 422.965 kb on + strand, within Xcc-8004.460.1 at 422.976 kb on + strand, within Xcc-8004.460.1 at 422.976 kb on + strand, within Xcc-8004.460.1 at 422.976 kb on + strand, within Xcc-8004.460.1 at 423.165 kb on - strand at 423.259 kb on + strand at 423.259 kb on + strand at 423.279 kb on - strand at 423.623 kb on - strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 424.340 kb on + strand at 424.380 kb on + strand at 424.381 kb on - strand at 424.381 kb on - strand at 424.389 kb on + strand at 424.390 kb on - strand at 424.474 kb on + strand at 424.474 kb on + strand at 424.475 kb on - strand at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.673 kb on - strand, within Xcc-8004.462.1 at 424.722 kb on + strand, within Xcc-8004.462.1 at 424.874 kb on - strand at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.182 kb on - strand, within Xcc-8004.463.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 422,695 + Xcc-8004.460.1 0.66 -1.9 422,695 + Xcc-8004.460.1 0.66 -0.2 422,696 - Xcc-8004.460.1 0.66 -1.5 422,745 + Xcc-8004.460.1 0.70 +0.4 422,772 + Xcc-8004.460.1 0.72 -0.6 422,772 + Xcc-8004.460.1 0.72 +1.1 422,772 + Xcc-8004.460.1 0.72 +3.6 422,860 + Xcc-8004.460.1 0.80 +2.0 422,861 - Xcc-8004.460.1 0.80 -1.3 422,877 + Xcc-8004.460.1 0.81 +0.1 422,877 + Xcc-8004.460.1 0.81 -0.2 422,965 + Xcc-8004.460.1 0.88 +0.6 422,976 + Xcc-8004.460.1 0.89 +0.8 422,976 + Xcc-8004.460.1 0.89 +1.4 422,976 + Xcc-8004.460.1 0.89 -0.2 423,165 - -1.3 423,259 + -1.1 423,259 + +0.1 423,279 - -1.1 423,623 - Xcc-8004.461.1 0.18 -0.9 423,777 + Xcc-8004.461.1 0.36 -1.4 423,777 + Xcc-8004.461.1 0.36 -0.4 423,777 + Xcc-8004.461.1 0.36 -0.0 423,777 + Xcc-8004.461.1 0.36 -1.5 424,340 + -2.2 424,380 + +1.2 424,381 - +0.6 424,381 - +0.6 424,389 + -0.0 424,390 - +0.6 424,474 + +1.3 424,474 + -1.3 424,475 - -0.6 424,528 + Xcc-8004.462.1 0.15 +1.0 424,528 + Xcc-8004.462.1 0.15 -1.0 424,528 + Xcc-8004.462.1 0.15 -1.7 424,529 - Xcc-8004.462.1 0.16 -0.2 424,529 - Xcc-8004.462.1 0.16 +1.7 424,529 - Xcc-8004.462.1 0.16 +0.9 424,673 - Xcc-8004.462.1 0.51 -0.5 424,722 + Xcc-8004.462.1 0.63 -1.3 424,874 - +1.0 425,030 + Xcc-8004.463.1 0.16 +0.5 425,030 + Xcc-8004.463.1 0.16 +0.9 425,030 + Xcc-8004.463.1 0.16 +2.2 425,182 - Xcc-8004.463.1 0.36 -0.1
Or see this region's nucleotide sequence