Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3754.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3753.1 and Xcc-8004.3754.1 overlap by 8 nucleotidesXcc-8004.3754.1 and Xcc-8004.3755.1 overlap by 32 nucleotidesXcc-8004.3755.1 and Xcc-8004.3756.1 are separated by 70 nucleotides Xcc-8004.3753.1: Xcc-8004.3753.1 - putative secreted protein, at 3,625,251 to 3,626,855 Xcc-8004.3753.1 Xcc-8004.3754.1: Xcc-8004.3754.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 3,626,848 to 3,627,660 Xcc-8004.3754.1 Xcc-8004.3755.1: Xcc-8004.3755.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 3,627,629 to 3,627,952 Xcc-8004.3755.1 Xcc-8004.3756.1: Xcc-8004.3756.1 - Glyoxalase family protein, at 3,628,023 to 3,628,553 Xcc-8004.3756.1 Position (kb) 3626 3627 3628Strain fitness (log2 ratio) -2 -1 0 1at 3625.872 kb on + strand, within Xcc-8004.3753.1at 3625.873 kb on - strand, within Xcc-8004.3753.1at 3626.005 kb on - strand, within Xcc-8004.3753.1at 3626.291 kb on + strand, within Xcc-8004.3753.1at 3626.322 kb on + strand, within Xcc-8004.3753.1at 3626.322 kb on + strand, within Xcc-8004.3753.1at 3626.323 kb on - strand, within Xcc-8004.3753.1at 3626.709 kb on + strandat 3627.138 kb on - strand, within Xcc-8004.3754.1at 3627.148 kb on - strand, within Xcc-8004.3754.1at 3627.547 kb on - strand, within Xcc-8004.3754.1at 3627.719 kb on + strand, within Xcc-8004.3755.1at 3627.775 kb on + strand, within Xcc-8004.3755.1at 3627.819 kb on - strand, within Xcc-8004.3755.1at 3627.819 kb on - strand, within Xcc-8004.3755.1at 3627.819 kb on - strand, within Xcc-8004.3755.1at 3627.825 kb on + strand, within Xcc-8004.3755.1at 3627.862 kb on + strand, within Xcc-8004.3755.1at 3627.863 kb on - strand, within Xcc-8004.3755.1at 3627.936 kb on + strandat 3627.937 kb on - strandat 3628.024 kb on + strandat 3628.025 kb on - strandat 3628.376 kb on + strand, within Xcc-8004.3756.1at 3628.376 kb on + strand, within Xcc-8004.3756.1at 3628.376 kb on + strand, within Xcc-8004.3756.1at 3628.376 kb on + strand, within Xcc-8004.3756.1at 3628.376 kb on + strand, within Xcc-8004.3756.1at 3628.378 kb on + strand, within Xcc-8004.3756.1at 3628.525 kb on + strandat 3628.554 kb on - strandat 3628.554 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,625,872 + Xcc-8004.3753.1 0.39 -0.0
3,625,873 - Xcc-8004.3753.1 0.39 -1.2
3,626,005 - Xcc-8004.3753.1 0.47 +0.0
3,626,291 + Xcc-8004.3753.1 0.65 -0.5
3,626,322 + Xcc-8004.3753.1 0.67 -0.3
3,626,322 + Xcc-8004.3753.1 0.67 -1.9
3,626,323 - Xcc-8004.3753.1 0.67 -0.8
3,626,709 + +0.4
3,627,138 - Xcc-8004.3754.1 0.36 +0.7
3,627,148 - Xcc-8004.3754.1 0.37 +0.7
3,627,547 - Xcc-8004.3754.1 0.86 +0.5
3,627,719 + Xcc-8004.3755.1 0.28 -0.3
3,627,775 + Xcc-8004.3755.1 0.45 -0.5
3,627,819 - Xcc-8004.3755.1 0.59 +0.3
3,627,819 - Xcc-8004.3755.1 0.59 +1.2
3,627,819 - Xcc-8004.3755.1 0.59 -0.1
3,627,825 + Xcc-8004.3755.1 0.60 -0.7
3,627,862 + Xcc-8004.3755.1 0.72 -1.9
3,627,863 - Xcc-8004.3755.1 0.72 +0.3
3,627,936 + -0.6
3,627,937 - -0.2
3,628,024 + -1.1
3,628,025 - +1.1
3,628,376 + Xcc-8004.3756.1 0.66 +0.3
3,628,376 + Xcc-8004.3756.1 0.66 -0.2
3,628,376 + Xcc-8004.3756.1 0.66 -0.7
3,628,376 + Xcc-8004.3756.1 0.66 +1.4
3,628,376 + Xcc-8004.3756.1 0.66 -1.7
3,628,378 + Xcc-8004.3756.1 0.67 -0.1
3,628,525 + -0.4
3,628,554 - -1.1
3,628,554 - +0.1

Or see this region's nucleotide sequence