Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3560.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3558.1 and Xcc-8004.3559.1 are separated by 2 nucleotidesXcc-8004.3559.1 and Xcc-8004.3560.1 overlap by 4 nucleotidesXcc-8004.3560.1 and Xcc-8004.3561.1 are separated by 2 nucleotides Xcc-8004.3558.1: Xcc-8004.3558.1 - Ribosome recycling factor, at 3,448,578 to 3,449,135 Xcc-8004.3558.1 Xcc-8004.3559.1: Xcc-8004.3559.1 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,449,138 to 3,449,914 Xcc-8004.3559.1 Xcc-8004.3560.1: Xcc-8004.3560.1 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,449,911 to 3,450,738 Xcc-8004.3560.1 Xcc-8004.3561.1: Xcc-8004.3561.1 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 3,450,741 to 3,451,931 Xcc-8004.3561.1 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -2 -1 0 1at 3450.736 kb on + strandat 3450.736 kb on + strandat 3450.736 kb on + strandat 3450.736 kb on + strandat 3450.736 kb on + strandat 3450.736 kb on + strandat 3450.736 kb on + strandat 3450.737 kb on - strandat 3450.737 kb on - strandat 3450.737 kb on - strandat 3450.737 kb on - strandat 3450.737 kb on - strandat 3450.737 kb on - strandat 3450.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,450,736 + +0.1
3,450,736 + +0.6
3,450,736 + +0.2
3,450,736 + -0.3
3,450,736 + -0.2
3,450,736 + +0.3
3,450,736 + -0.0
3,450,737 - -1.7
3,450,737 - -0.6
3,450,737 - -1.3
3,450,737 - +0.4
3,450,737 - +1.6
3,450,737 - -0.9
3,450,737 - -1.9

Or see this region's nucleotide sequence