Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3415.1 and Xcc-8004.3416.1 are separated by 220 nucleotides Xcc-8004.3416.1 and Xcc-8004.3417.1 overlap by 4 nucleotides Xcc-8004.3417.1 and Xcc-8004.3418.1 are separated by 95 nucleotides
Xcc-8004.3415.1: Xcc-8004.3415.1 - Lysine decarboxylase family, at 3,306,510 to 3,307,196
Xcc-8004.3415.1
Xcc-8004.3416.1: Xcc-8004.3416.1 - FIG000605: protein co-occurring with transport systems (COG1739), at 3,307,417 to 3,308,010
Xcc-8004.3416.1
Xcc-8004.3417.1: Xcc-8004.3417.1 - ABC-type multidrug transport system, ATPase and permease components, at 3,308,007 to 3,309,773
Xcc-8004.3417.1
Xcc-8004.3418.1: Xcc-8004.3418.1 - Hydrogen peroxide-inducible genes activator, at 3,309,869 to 3,310,768
Xcc-8004.3418.1
Position (kb) 3308
3309
3310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 3307.017 kb on + strand, within Xcc-8004.3415.1 at 3307.017 kb on + strand, within Xcc-8004.3415.1 at 3307.017 kb on + strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.095 kb on + strand, within Xcc-8004.3415.1 at 3307.095 kb on + strand, within Xcc-8004.3415.1 at 3307.137 kb on + strand at 3307.137 kb on + strand at 3307.137 kb on + strand at 3307.138 kb on - strand at 3307.138 kb on - strand at 3307.138 kb on - strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.246 kb on - strand at 3307.246 kb on - strand at 3307.246 kb on - strand at 3307.246 kb on - strand at 3307.248 kb on + strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.283 kb on + strand at 3307.284 kb on - strand at 3307.284 kb on - strand at 3307.284 kb on - strand at 3307.284 kb on - strand at 3307.404 kb on + strand at 3307.404 kb on + strand at 3307.404 kb on + strand at 3307.404 kb on + strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.570 kb on + strand, within Xcc-8004.3416.1 at 3307.571 kb on - strand, within Xcc-8004.3416.1 at 3307.588 kb on + strand, within Xcc-8004.3416.1 at 3307.589 kb on - strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.663 kb on + strand, within Xcc-8004.3416.1 at 3307.697 kb on - strand, within Xcc-8004.3416.1 at 3308.271 kb on + strand, within Xcc-8004.3417.1 at 3308.271 kb on + strand, within Xcc-8004.3417.1 at 3308.272 kb on - strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.395 kb on + strand, within Xcc-8004.3417.1 at 3308.644 kb on + strand, within Xcc-8004.3417.1 at 3308.645 kb on - strand, within Xcc-8004.3417.1 at 3308.740 kb on + strand, within Xcc-8004.3417.1 at 3308.741 kb on - strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3309.238 kb on + strand, within Xcc-8004.3417.1 at 3309.238 kb on + strand, within Xcc-8004.3417.1 at 3309.238 kb on + strand, within Xcc-8004.3417.1 at 3309.239 kb on - strand, within Xcc-8004.3417.1 at 3309.239 kb on - strand, within Xcc-8004.3417.1 at 3309.239 kb on - strand, within Xcc-8004.3417.1 at 3309.239 kb on - strand, within Xcc-8004.3417.1 at 3309.239 kb on - strand, within Xcc-8004.3417.1 at 3309.239 kb on - strand, within Xcc-8004.3417.1 at 3309.287 kb on - strand, within Xcc-8004.3417.1 at 3309.406 kb on - strand, within Xcc-8004.3417.1 at 3309.430 kb on - strand, within Xcc-8004.3417.1 at 3309.430 kb on - strand, within Xcc-8004.3417.1 at 3309.430 kb on - strand, within Xcc-8004.3417.1 at 3309.430 kb on - strand, within Xcc-8004.3417.1 at 3309.735 kb on + strand at 3309.905 kb on + strand at 3309.905 kb on + strand at 3309.906 kb on - strand at 3309.906 kb on - strand at 3309.906 kb on - strand at 3310.051 kb on + strand, within Xcc-8004.3418.1 at 3310.051 kb on + strand, within Xcc-8004.3418.1 at 3310.052 kb on - strand, within Xcc-8004.3418.1 at 3310.190 kb on + strand, within Xcc-8004.3418.1 at 3310.473 kb on - strand, within Xcc-8004.3418.1 at 3310.535 kb on + strand, within Xcc-8004.3418.1 at 3310.610 kb on + strand, within Xcc-8004.3418.1 at 3310.610 kb on + strand, within Xcc-8004.3418.1 at 3310.610 kb on + strand, within Xcc-8004.3418.1 at 3310.610 kb on + strand, within Xcc-8004.3418.1 at 3310.610 kb on + strand, within Xcc-8004.3418.1 at 3310.610 kb on + strand, within Xcc-8004.3418.1 at 3310.611 kb on - strand, within Xcc-8004.3418.1 at 3310.611 kb on - strand, within Xcc-8004.3418.1 at 3310.611 kb on - strand, within Xcc-8004.3418.1 at 3310.611 kb on - strand, within Xcc-8004.3418.1 at 3310.673 kb on + strand, within Xcc-8004.3418.1 at 3310.673 kb on + strand, within Xcc-8004.3418.1 at 3310.673 kb on + strand, within Xcc-8004.3418.1 at 3310.674 kb on - strand, within Xcc-8004.3418.1 at 3310.674 kb on - strand, within Xcc-8004.3418.1 at 3310.674 kb on - strand, within Xcc-8004.3418.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 3,307,017 + Xcc-8004.3415.1 0.74 +0.2 3,307,017 + Xcc-8004.3415.1 0.74 -1.5 3,307,017 + Xcc-8004.3415.1 0.74 +0.3 3,307,018 - Xcc-8004.3415.1 0.74 -2.1 3,307,018 - Xcc-8004.3415.1 0.74 +1.3 3,307,018 - Xcc-8004.3415.1 0.74 -0.9 3,307,018 - Xcc-8004.3415.1 0.74 -0.7 3,307,095 + Xcc-8004.3415.1 0.85 -1.8 3,307,095 + Xcc-8004.3415.1 0.85 -0.3 3,307,137 + -1.0 3,307,137 + -1.1 3,307,137 + +0.8 3,307,138 - -0.8 3,307,138 - +0.4 3,307,138 - +1.8 3,307,245 + +0.4 3,307,245 + +0.9 3,307,245 + +0.2 3,307,245 + -0.4 3,307,245 + -0.6 3,307,245 + -1.6 3,307,245 + -0.4 3,307,245 + +1.0 3,307,245 + -0.4 3,307,245 + +0.1 3,307,245 + -1.8 3,307,245 + +0.1 3,307,246 - -0.7 3,307,246 - +1.4 3,307,246 - +0.3 3,307,246 - -2.1 3,307,248 + -0.5 3,307,276 - -0.1 3,307,276 - +1.1 3,307,276 - -1.0 3,307,276 - +0.7 3,307,276 - -1.0 3,307,283 + +1.6 3,307,284 - -1.5 3,307,284 - -0.3 3,307,284 - +0.4 3,307,284 - -1.3 3,307,404 + -0.4 3,307,404 + +0.3 3,307,404 + -0.4 3,307,404 + +0.3 3,307,405 - -0.8 3,307,405 - +0.5 3,307,405 - +0.3 3,307,405 - +0.4 3,307,405 - -0.8 3,307,405 - +0.2 3,307,405 - -0.6 3,307,405 - -0.6 3,307,570 + Xcc-8004.3416.1 0.26 -1.0 3,307,571 - Xcc-8004.3416.1 0.26 -0.1 3,307,588 + Xcc-8004.3416.1 0.29 -0.9 3,307,589 - Xcc-8004.3416.1 0.29 +0.7 3,307,640 + Xcc-8004.3416.1 0.38 +0.1 3,307,640 + Xcc-8004.3416.1 0.38 +1.2 3,307,640 + Xcc-8004.3416.1 0.38 +1.2 3,307,640 + Xcc-8004.3416.1 0.38 +1.0 3,307,641 - Xcc-8004.3416.1 0.38 -1.8 3,307,641 - Xcc-8004.3416.1 0.38 -0.4 3,307,641 - Xcc-8004.3416.1 0.38 +3.8 3,307,641 - Xcc-8004.3416.1 0.38 +1.3 3,307,663 + Xcc-8004.3416.1 0.41 +0.2 3,307,697 - Xcc-8004.3416.1 0.47 +0.1 3,308,271 + Xcc-8004.3417.1 0.15 +1.8 3,308,271 + Xcc-8004.3417.1 0.15 +1.1 3,308,272 - Xcc-8004.3417.1 0.15 -1.5 3,308,325 + Xcc-8004.3417.1 0.18 -0.5 3,308,325 + Xcc-8004.3417.1 0.18 -0.9 3,308,325 + Xcc-8004.3417.1 0.18 +0.3 3,308,325 + Xcc-8004.3417.1 0.18 +1.6 3,308,325 + Xcc-8004.3417.1 0.18 +0.7 3,308,325 + Xcc-8004.3417.1 0.18 +0.2 3,308,325 + Xcc-8004.3417.1 0.18 -0.6 3,308,325 + Xcc-8004.3417.1 0.18 -1.4 3,308,325 + Xcc-8004.3417.1 0.18 -0.0 3,308,326 - Xcc-8004.3417.1 0.18 -0.8 3,308,326 - Xcc-8004.3417.1 0.18 -0.6 3,308,326 - Xcc-8004.3417.1 0.18 +0.0 3,308,326 - Xcc-8004.3417.1 0.18 +0.1 3,308,326 - Xcc-8004.3417.1 0.18 -1.5 3,308,326 - Xcc-8004.3417.1 0.18 -0.6 3,308,395 + Xcc-8004.3417.1 0.22 -2.5 3,308,644 + Xcc-8004.3417.1 0.36 +0.4 3,308,645 - Xcc-8004.3417.1 0.36 -0.7 3,308,740 + Xcc-8004.3417.1 0.41 -0.6 3,308,741 - Xcc-8004.3417.1 0.42 +0.5 3,308,880 + Xcc-8004.3417.1 0.49 -0.4 3,308,880 + Xcc-8004.3417.1 0.49 +1.9 3,308,880 + Xcc-8004.3417.1 0.49 -2.2 3,308,880 + Xcc-8004.3417.1 0.49 -0.5 3,308,880 + Xcc-8004.3417.1 0.49 +0.7 3,308,880 + Xcc-8004.3417.1 0.49 -0.0 3,308,880 + Xcc-8004.3417.1 0.49 +0.4 3,308,880 + Xcc-8004.3417.1 0.49 -0.7 3,308,880 + Xcc-8004.3417.1 0.49 -1.1 3,308,881 - Xcc-8004.3417.1 0.49 -0.3 3,308,881 - Xcc-8004.3417.1 0.49 +0.3 3,308,881 - Xcc-8004.3417.1 0.49 +1.1 3,308,881 - Xcc-8004.3417.1 0.49 -0.8 3,308,881 - Xcc-8004.3417.1 0.49 +0.9 3,308,881 - Xcc-8004.3417.1 0.49 +0.1 3,308,881 - Xcc-8004.3417.1 0.49 -2.8 3,308,881 - Xcc-8004.3417.1 0.49 -1.6 3,308,881 - Xcc-8004.3417.1 0.49 -1.1 3,308,881 - Xcc-8004.3417.1 0.49 +0.2 3,308,881 - Xcc-8004.3417.1 0.49 -0.8 3,308,881 - Xcc-8004.3417.1 0.49 -1.7 3,308,881 - Xcc-8004.3417.1 0.49 +0.4 3,308,881 - Xcc-8004.3417.1 0.49 +0.7 3,309,238 + Xcc-8004.3417.1 0.70 +0.9 3,309,238 + Xcc-8004.3417.1 0.70 -1.8 3,309,238 + Xcc-8004.3417.1 0.70 -1.6 3,309,239 - Xcc-8004.3417.1 0.70 +0.0 3,309,239 - Xcc-8004.3417.1 0.70 +0.7 3,309,239 - Xcc-8004.3417.1 0.70 -1.7 3,309,239 - Xcc-8004.3417.1 0.70 +0.8 3,309,239 - Xcc-8004.3417.1 0.70 -1.5 3,309,239 - Xcc-8004.3417.1 0.70 +0.7 3,309,287 - Xcc-8004.3417.1 0.72 -0.5 3,309,406 - Xcc-8004.3417.1 0.79 -1.3 3,309,430 - Xcc-8004.3417.1 0.81 -0.2 3,309,430 - Xcc-8004.3417.1 0.81 +1.2 3,309,430 - Xcc-8004.3417.1 0.81 +0.9 3,309,430 - Xcc-8004.3417.1 0.81 +0.2 3,309,735 + -0.5 3,309,905 + +0.2 3,309,905 + +1.0 3,309,906 - -0.8 3,309,906 - -0.1 3,309,906 - -1.1 3,310,051 + Xcc-8004.3418.1 0.20 -0.0 3,310,051 + Xcc-8004.3418.1 0.20 -0.2 3,310,052 - Xcc-8004.3418.1 0.20 -0.0 3,310,190 + Xcc-8004.3418.1 0.36 +0.4 3,310,473 - Xcc-8004.3418.1 0.67 -0.3 3,310,535 + Xcc-8004.3418.1 0.74 -0.1 3,310,610 + Xcc-8004.3418.1 0.82 -0.2 3,310,610 + Xcc-8004.3418.1 0.82 +1.2 3,310,610 + Xcc-8004.3418.1 0.82 -0.0 3,310,610 + Xcc-8004.3418.1 0.82 +1.0 3,310,610 + Xcc-8004.3418.1 0.82 -0.8 3,310,610 + Xcc-8004.3418.1 0.82 +0.8 3,310,611 - Xcc-8004.3418.1 0.82 -0.7 3,310,611 - Xcc-8004.3418.1 0.82 +0.5 3,310,611 - Xcc-8004.3418.1 0.82 +0.1 3,310,611 - Xcc-8004.3418.1 0.82 -0.7 3,310,673 + Xcc-8004.3418.1 0.89 +0.1 3,310,673 + Xcc-8004.3418.1 0.89 +6.3 3,310,673 + Xcc-8004.3418.1 0.89 +0.8 3,310,674 - Xcc-8004.3418.1 0.89 -3.1 3,310,674 - Xcc-8004.3418.1 0.89 -0.5 3,310,674 - Xcc-8004.3418.1 0.89 -0.8
Or see this region's nucleotide sequence