Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2829.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
2,744,630	-		Xcc-8004.2828.1	0.61	+0.0
2,744,674	+		Xcc-8004.2828.1	0.63	-1.5
2,744,674	+		Xcc-8004.2828.1	0.63	+1.0
2,744,674	+		Xcc-8004.2828.1	0.63	+0.5
2,744,674	+		Xcc-8004.2828.1	0.63	+0.4
2,744,674	+		Xcc-8004.2828.1	0.63	+1.5
2,744,674	+		Xcc-8004.2828.1	0.63	-1.9
2,744,674	+		Xcc-8004.2828.1	0.63	-1.6
2,744,674	+		Xcc-8004.2828.1	0.63	-0.6
2,744,675	-		Xcc-8004.2828.1	0.63	+0.8
2,744,675	-		Xcc-8004.2828.1	0.63	-1.1
2,744,675	-		Xcc-8004.2828.1	0.63	-0.1
2,744,675	-		Xcc-8004.2828.1	0.63	-1.3
2,744,675	-		Xcc-8004.2828.1	0.63	-0.4
2,744,675	-		Xcc-8004.2828.1	0.63	+1.8
2,744,723	+		Xcc-8004.2828.1	0.65	-0.7
2,744,723	+		Xcc-8004.2828.1	0.65	+1.5
2,744,723	+		Xcc-8004.2828.1	0.65	-0.2
2,744,723	+		Xcc-8004.2828.1	0.65	-1.8
2,744,723	+		Xcc-8004.2828.1	0.65	+3.5
2,744,723	+		Xcc-8004.2828.1	0.65	+1.4
2,744,723	+		Xcc-8004.2828.1	0.65	-1.0
2,744,723	+		Xcc-8004.2828.1	0.65	+0.5
2,744,724	-		Xcc-8004.2828.1	0.65	-0.9
2,744,724	-		Xcc-8004.2828.1	0.65	+0.3
2,744,724	-		Xcc-8004.2828.1	0.65	-1.7
2,744,724	-		Xcc-8004.2828.1	0.65	+0.0
2,744,724	-		Xcc-8004.2828.1	0.65	+0.4
2,744,724	-		Xcc-8004.2828.1	0.65	+0.4
2,744,724	-		Xcc-8004.2828.1	0.65	-0.5
2,744,724	-		Xcc-8004.2828.1	0.65	+0.5
2,744,724	-		Xcc-8004.2828.1	0.65	-1.3
2,744,724	-		Xcc-8004.2828.1	0.65	+1.0
2,744,724	-		Xcc-8004.2828.1	0.65	+0.7
2,744,724	-		Xcc-8004.2828.1	0.65	+1.2
2,744,724	-		Xcc-8004.2828.1	0.65	+0.2
2,744,794	+		Xcc-8004.2828.1	0.68	+2.3
2,744,794	+		Xcc-8004.2828.1	0.68	+0.0
2,744,795	-		Xcc-8004.2828.1	0.69	-1.5
2,744,795	-		Xcc-8004.2828.1	0.69	-0.3
2,744,795	-		Xcc-8004.2828.1	0.69	-1.3
2,744,795	-		Xcc-8004.2828.1	0.69	+0.6
2,744,812	+		Xcc-8004.2828.1	0.69	-0.3
2,744,812	+		Xcc-8004.2828.1	0.69	-0.8
2,744,812	+		Xcc-8004.2828.1	0.69	+2.0
2,744,812	+		Xcc-8004.2828.1	0.69	-2.1
2,744,812	+		Xcc-8004.2828.1	0.69	-1.5
2,744,812	+		Xcc-8004.2828.1	0.69	-0.6
2,744,812	+		Xcc-8004.2828.1	0.69	+1.8
2,744,812	+		Xcc-8004.2828.1	0.69	+0.5
2,744,812	+		Xcc-8004.2828.1	0.69	-0.4
2,744,812	+		Xcc-8004.2828.1	0.69	+1.1
2,744,812	+		Xcc-8004.2828.1	0.69	+0.6
2,744,813	-		Xcc-8004.2828.1	0.69	+0.7
2,744,813	-		Xcc-8004.2828.1	0.69	-0.2
2,744,813	-		Xcc-8004.2828.1	0.69	+0.8
2,744,813	-		Xcc-8004.2828.1	0.69	+1.0
2,744,813	-		Xcc-8004.2828.1	0.69	-0.8
2,744,972	+		Xcc-8004.2828.1	0.77	+0.5
2,745,400	+				+0.8
2,745,400	+				-1.5
2,745,400	+				-0.1
2,745,400	+				+0.5
2,745,400	+				+0.6
2,745,400	+				-0.1
2,745,400	+				-0.9
2,745,401	-				+2.0
2,745,401	-				-0.5
2,745,401	-				-0.5
2,745,401	-				-1.0
2,745,401	-				-2.0
2,745,401	-				-1.5
2,745,401	-				-0.6
2,745,401	-				+1.1
2,745,401	-				+0.2
2,745,401	-				+0.2
2,745,401	-				-0.0
2,745,401	-				+0.0
2,745,401	-				+1.3
2,745,401	-				+0.8
2,745,402	+				+1.7
2,745,402	+				+0.0
2,745,403	-				+0.2
2,745,403	-				-1.4
2,745,403	-				+0.4
2,745,403	-				-0.2
2,745,403	-				-0.3
2,745,403	-				+0.2
2,745,447	+				-1.3
2,745,447	+				+1.2
2,745,447	+				-1.5
2,745,447	+				+1.7
2,745,447	+				+0.8
2,745,447	+				-1.8
2,745,447	+				+0.6
2,745,448	-				-1.3
2,745,448	-				+0.5
2,745,448	-				-0.2
2,745,448	-				-0.6
2,745,448	-				+0.1
2,745,448	-				-0.2
2,745,448	-				-0.8
2,745,448	-				+0.3
2,745,448	-				-1.4
2,745,448	-				+0.0
2,745,448	-				-0.6
2,745,448	-				-1.1
2,745,497	+		Xcc-8004.2829.1	0.16	-1.0
2,745,497	+		Xcc-8004.2829.1	0.16	+1.6
2,745,497	+		Xcc-8004.2829.1	0.16	-0.6
2,745,497	+		Xcc-8004.2829.1	0.16	+0.4
2,745,497	+		Xcc-8004.2829.1	0.16	+0.6
2,745,497	+		Xcc-8004.2829.1	0.16	-0.3
2,745,497	+		Xcc-8004.2829.1	0.16	+1.6
2,745,497	+		Xcc-8004.2829.1	0.16	+0.4
2,745,497	+		Xcc-8004.2829.1	0.16	+0.2
2,745,497	+		Xcc-8004.2829.1	0.16	+3.0
2,745,497	+		Xcc-8004.2829.1	0.16	-0.9
2,745,497	+		Xcc-8004.2829.1	0.16	+0.5
2,745,497	+		Xcc-8004.2829.1	0.16	-0.3
2,745,497	+		Xcc-8004.2829.1	0.16	-2.5
2,745,497	+		Xcc-8004.2829.1	0.16	+1.0
2,745,497	+		Xcc-8004.2829.1	0.16	-1.4
2,745,497	+		Xcc-8004.2829.1	0.16	-1.3
2,745,498	-		Xcc-8004.2829.1	0.17	-0.2
2,745,498	-		Xcc-8004.2829.1	0.17	-0.5
2,745,498	-		Xcc-8004.2829.1	0.17	+0.2
2,745,498	-		Xcc-8004.2829.1	0.17	-0.4
2,745,498	-		Xcc-8004.2829.1	0.17	-0.9
2,745,498	-		Xcc-8004.2829.1	0.17	+0.6
2,745,498	-		Xcc-8004.2829.1	0.17	+0.2
2,745,498	-		Xcc-8004.2829.1	0.17	-1.6
2,745,498	-		Xcc-8004.2829.1	0.17	-1.3
2,745,498	-		Xcc-8004.2829.1	0.17	+3.5
2,745,498	-		Xcc-8004.2829.1	0.17	+1.2
2,745,498	-		Xcc-8004.2829.1	0.17	+0.3
2,745,498	-		Xcc-8004.2829.1	0.17	-2.2
2,745,498	-		Xcc-8004.2829.1	0.17	-1.5
2,745,498	-		Xcc-8004.2829.1	0.17	-0.1
2,745,594	+		Xcc-8004.2829.1	0.47	+4.7
2,745,595	-		Xcc-8004.2829.1	0.47	+0.4
2,745,595	-		Xcc-8004.2829.1	0.47	-0.8
2,745,595	-		Xcc-8004.2829.1	0.47	-0.4
2,745,655	+		Xcc-8004.2829.1	0.66	+4.5
2,745,655	+		Xcc-8004.2829.1	0.66	+0.1
2,745,655	+		Xcc-8004.2829.1	0.66	+1.6
2,745,655	+		Xcc-8004.2829.1	0.66	-1.1
2,745,655	+		Xcc-8004.2829.1	0.66	+1.2
2,745,655	+		Xcc-8004.2829.1	0.66	+0.3
2,745,655	+		Xcc-8004.2829.1	0.66	+0.6
2,745,655	+		Xcc-8004.2829.1	0.66	+1.1
2,745,656	-		Xcc-8004.2829.1	0.67	-0.9
2,745,656	-		Xcc-8004.2829.1	0.67	+0.2
2,745,656	-		Xcc-8004.2829.1	0.67	+0.0
2,745,656	-		Xcc-8004.2829.1	0.67	-0.8
2,745,656	-		Xcc-8004.2829.1	0.67	+0.1
2,745,656	-		Xcc-8004.2829.1	0.67	-0.4
2,745,656	-		Xcc-8004.2829.1	0.67	+0.7
2,745,718	+		Xcc-8004.2829.1	0.86	+0.2
2,745,718	+		Xcc-8004.2829.1	0.86	+1.8
2,745,718	+		Xcc-8004.2829.1	0.86	+1.2
2,745,718	+		Xcc-8004.2829.1	0.86	+1.0
2,745,718	+		Xcc-8004.2829.1	0.86	-0.6
2,745,718	+		Xcc-8004.2829.1	0.86	+2.0
2,745,718	+		Xcc-8004.2829.1	0.86	-1.3
2,745,719	-		Xcc-8004.2829.1	0.87	-0.2
2,745,719	-		Xcc-8004.2829.1	0.87	-0.7
2,745,719	-		Xcc-8004.2829.1	0.87	+1.8
2,745,719	-		Xcc-8004.2829.1	0.87	+1.6
2,745,760	+				+1.8
2,745,760	+				+2.6
2,745,760	+				+2.0
2,745,761	-				-1.1
2,745,761	-				-0.6
2,745,801	+				+0.9
2,745,801	+				+0.5
2,745,801	+				-0.5
2,745,801	+				+0.9
2,745,802	-				-0.2
2,745,802	-				-1.2
2,745,802	-				+0.8
2,745,802	-				-1.0
2,745,802	-				-0.5
2,745,802	-				-0.8
2,745,802	-				+1.1
2,745,850	-				+0.7
2,745,850	-				+2.2
2,745,862	+				+1.3
2,745,862	+				+1.1
2,745,862	+				+1.7
2,745,862	+				+2.7
2,745,862	+				+1.0
2,745,862	+				+2.4
2,745,862	+				+1.6
2,745,863	-				+0.9
2,745,863	-				+2.9
2,745,863	-				+1.7
2,745,863	-				-0.5
2,745,863	-				-0.3
2,745,863	-				+0.2
2,745,863	-				-1.0
2,745,890	-				+0.3
2,745,911	+				+1.3
2,745,945	+				+2.0
2,745,945	+				+2.3
2,745,945	+				+1.7
2,745,945	+				+3.5
2,745,946	-				-0.2
2,745,946	-				+0.8
2,745,946	-				+1.1
2,745,946	-				-0.3
2,745,946	-				-0.0
2,745,946	-				+0.1
2,745,946	-				-0.9
2,745,977	+				+2.1
2,745,977	+				+1.3
2,745,977	+				+1.4
2,745,977	+				+1.1
2,745,978	-				+0.3
2,745,978	-				-2.5
2,745,978	-				+0.4
2,745,978	-				+0.3
2,745,978	-				+0.6
2,746,004	+				+1.3
2,746,112	+				+1.5
2,746,112	+				+2.2
2,746,112	+				+1.7
2,746,112	+				+1.9
2,746,112	+				+1.6
2,746,112	+				+0.9
2,746,112	+				+1.8
2,746,112	+				+1.8
2,746,112	+				+0.5
2,746,112	+				+0.4
2,746,113	-				+0.6
2,746,113	-				-0.5
2,746,113	-				+1.1
2,746,113	-				-1.1
2,746,113	-				+0.9
2,746,113	-				+0.4
2,746,113	-				-0.9
2,746,113	-				-2.5
2,746,113	-				+0.8
2,746,113	-				-0.5
2,746,113	-				+1.4
2,746,113	-				-1.6
2,746,113	-				+0.7
2,746,113	-				+2.1
2,746,113	-				-2.2
2,746,295	+				+1.9
2,746,295	+				+1.2
2,746,295	+				+4.0
2,746,295	+				+2.0
2,746,295	+				+1.1
2,746,295	+				-0.3
2,746,295	+				+2.4
2,746,295	+				+3.3
2,746,295	+				+2.8
2,746,295	+				+2.3
2,746,295	+				+2.4
2,746,295	+				+2.8
2,746,295	+				+1.8
2,746,295	+				+2.7
2,746,295	+				+2.3
2,746,295	+				+3.1
2,746,295	+				+3.7
2,746,296	-				-0.5
2,746,296	-				+1.6
2,746,296	-				-1.2
2,746,296	-				+0.0
2,746,296	-				-0.3
2,746,296	-				+0.9
2,746,296	-				-0.9
2,746,296	-				+1.0
2,746,296	-				+2.0
2,746,296	-				-0.0
2,746,296	-				+0.2
2,746,296	-				+0.9
2,746,296	-				-1.6
2,746,296	-				+0.6
2,746,296	-				+1.8
2,746,296	-				+3.0
2,746,296	-				+0.6
2,746,296	-				-0.8
2,746,296	-				-0.3
2,746,296	-				-0.7
2,746,296	-				-1.2
2,746,296	-				+1.0
2,746,296	-				+1.0
2,746,296	-				-1.8
2,746,552	-		Xcc-8004.2830.1	0.12	-0.9
2,746,588	+		Xcc-8004.2830.1	0.14	+1.1
2,746,588	+		Xcc-8004.2830.1	0.14	+0.7
2,746,588	+		Xcc-8004.2830.1	0.14	+0.4
2,746,588	+		Xcc-8004.2830.1	0.14	-0.7
2,746,588	+		Xcc-8004.2830.1	0.14	+1.8
2,746,588	+		Xcc-8004.2830.1	0.14	+0.9
2,746,588	+		Xcc-8004.2830.1	0.14	+0.9
2,746,588	+		Xcc-8004.2830.1	0.14	-0.5
2,746,588	+		Xcc-8004.2830.1	0.14	+1.9
2,746,588	+		Xcc-8004.2830.1	0.14	+0.4
2,746,588	+		Xcc-8004.2830.1	0.14	+2.1
2,746,588	+		Xcc-8004.2830.1	0.14	+1.2
2,746,588	+		Xcc-8004.2830.1	0.14	+0.3
2,746,588	+		Xcc-8004.2830.1	0.14	+0.9
2,746,589	-		Xcc-8004.2830.1	0.14	-0.2
2,746,589	-		Xcc-8004.2830.1	0.14	+0.7
2,746,589	-		Xcc-8004.2830.1	0.14	+1.3
2,746,589	-		Xcc-8004.2830.1	0.14	+0.0
2,746,589	-		Xcc-8004.2830.1	0.14	+0.7
2,746,589	-		Xcc-8004.2830.1	0.14	+0.0
2,746,589	-		Xcc-8004.2830.1	0.14	-0.1
2,746,589	-		Xcc-8004.2830.1	0.14	+1.0