Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.166.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.163.1 and Xcc-8004.164.1 are separated by 186 nucleotidesXcc-8004.164.1 and Xcc-8004.165.1 are separated by 60 nucleotidesXcc-8004.165.1 and Xcc-8004.166.1 overlap by 4 nucleotidesXcc-8004.166.1 and Xcc-8004.168.1 are separated by 505 nucleotides Xcc-8004.163.1: Xcc-8004.163.1 - FIG01210576: hypothetical protein, at 155,229 to 159,110 Xcc-8004.163.1 Xcc-8004.164.1: Xcc-8004.164.1 - putative; ORF located using Glimmer/Genemark, at 159,297 to 159,506 Xcc-8004.164.1 Xcc-8004.165.1: Xcc-8004.165.1 - hypothetical protein, at 159,567 to 159,950 Xcc-8004.165.1 Xcc-8004.166.1: Xcc-8004.166.1 - FIG01209997: hypothetical protein, at 159,947 to 160,204 Xcc-8004.166.1 Xcc-8004.168.1: Xcc-8004.168.1 - hypothetical protein, at 160,710 to 161,405 Xcc-8004.168.1 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1 2at 158.962 kb on + strandat 158.962 kb on + strandat 158.962 kb on + strandat 158.962 kb on + strandat 158.963 kb on - strandat 158.963 kb on - strandat 159.057 kb on - strandat 159.152 kb on + strandat 159.152 kb on + strandat 159.152 kb on + strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.153 kb on - strandat 159.253 kb on + strandat 159.253 kb on + strandat 159.254 kb on - strandat 159.378 kb on - strand, within Xcc-8004.164.1at 159.421 kb on - strand, within Xcc-8004.164.1at 159.421 kb on - strand, within Xcc-8004.164.1at 159.459 kb on + strand, within Xcc-8004.164.1at 159.459 kb on + strand, within Xcc-8004.164.1at 159.460 kb on - strand, within Xcc-8004.164.1at 159.460 kb on - strand, within Xcc-8004.164.1at 159.473 kb on + strand, within Xcc-8004.164.1at 159.473 kb on + strand, within Xcc-8004.164.1at 159.474 kb on - strand, within Xcc-8004.164.1at 159.474 kb on - strand, within Xcc-8004.164.1at 159.505 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.554 kb on + strandat 159.555 kb on - strandat 159.586 kb on + strandat 159.654 kb on - strand, within Xcc-8004.165.1at 159.668 kb on - strand, within Xcc-8004.165.1at 159.935 kb on + strandat 159.936 kb on - strandat 159.981 kb on + strand, within Xcc-8004.166.1at 159.981 kb on + strand, within Xcc-8004.166.1at 159.981 kb on + strand, within Xcc-8004.166.1at 160.009 kb on + strand, within Xcc-8004.166.1at 160.043 kb on - strand, within Xcc-8004.166.1at 160.050 kb on - strand, within Xcc-8004.166.1at 160.100 kb on + strand, within Xcc-8004.166.1at 160.101 kb on - strand, within Xcc-8004.166.1at 160.101 kb on - strand, within Xcc-8004.166.1at 160.101 kb on - strand, within Xcc-8004.166.1at 160.167 kb on - strand, within Xcc-8004.166.1at 160.167 kb on - strand, within Xcc-8004.166.1at 160.169 kb on + strand, within Xcc-8004.166.1at 160.170 kb on - strand, within Xcc-8004.166.1at 160.255 kb on + strandat 160.280 kb on + strandat 160.306 kb on - strandat 160.306 kb on - strandat 160.481 kb on + strandat 160.487 kb on + strandat 160.527 kb on + strandat 160.527 kb on + strandat 160.527 kb on + strandat 160.528 kb on - strandat 160.528 kb on - strandat 160.558 kb on + strandat 160.590 kb on - strandat 160.596 kb on - strandat 160.637 kb on - strandat 160.648 kb on + strandat 160.685 kb on + strandat 160.685 kb on + strandat 160.686 kb on - strandat 160.686 kb on - strandat 160.824 kb on + strand, within Xcc-8004.168.1at 160.824 kb on + strand, within Xcc-8004.168.1at 160.824 kb on + strand, within Xcc-8004.168.1at 160.825 kb on - strand, within Xcc-8004.168.1at 160.825 kb on - strand, within Xcc-8004.168.1at 160.827 kb on + strand, within Xcc-8004.168.1at 160.828 kb on - strand, within Xcc-8004.168.1at 160.842 kb on - strand, within Xcc-8004.168.1at 160.847 kb on + strand, within Xcc-8004.168.1at 160.847 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.851 kb on + strand, within Xcc-8004.168.1at 160.852 kb on - strand, within Xcc-8004.168.1at 160.852 kb on - strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.853 kb on + strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.854 kb on - strand, within Xcc-8004.168.1at 160.919 kb on + strand, within Xcc-8004.168.1at 160.919 kb on + strand, within Xcc-8004.168.1at 160.920 kb on - strand, within Xcc-8004.168.1at 160.926 kb on + strand, within Xcc-8004.168.1at 160.926 kb on + strand, within Xcc-8004.168.1at 160.927 kb on - strand, within Xcc-8004.168.1at 161.011 kb on + strand, within Xcc-8004.168.1at 161.012 kb on - strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.129 kb on + strand, within Xcc-8004.168.1at 161.130 kb on - strand, within Xcc-8004.168.1at 161.130 kb on - strand, within Xcc-8004.168.1at 161.147 kb on + strand, within Xcc-8004.168.1at 161.148 kb on - strand, within Xcc-8004.168.1at 161.155 kb on + strand, within Xcc-8004.168.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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158,962 + +0.6
158,962 + -0.7
158,962 + +0.3
158,962 + -2.0
158,963 - -2.3
158,963 - +1.0
159,057 - -0.5
159,152 + -1.0
159,152 + -0.1
159,152 + -0.0
159,153 - -0.8
159,153 - -1.5
159,153 - +0.7
159,153 - -0.1
159,153 - -0.8
159,153 - -1.4
159,253 + -1.4
159,253 + -1.5
159,254 - +2.7
159,378 - Xcc-8004.164.1 0.39 +0.6
159,421 - Xcc-8004.164.1 0.59 -0.4
159,421 - Xcc-8004.164.1 0.59 -0.2
159,459 + Xcc-8004.164.1 0.77 -0.7
159,459 + Xcc-8004.164.1 0.77 +0.1
159,460 - Xcc-8004.164.1 0.78 -0.8
159,460 - Xcc-8004.164.1 0.78 -1.3
159,473 + Xcc-8004.164.1 0.84 +0.4
159,473 + Xcc-8004.164.1 0.84 +0.1
159,474 - Xcc-8004.164.1 0.84 -0.9
159,474 - Xcc-8004.164.1 0.84 +0.1
159,505 - -0.4
159,543 - +2.1
159,543 - +1.1
159,554 + +1.0
159,555 - +0.0
159,586 + +2.0
159,654 - Xcc-8004.165.1 0.23 -1.2
159,668 - Xcc-8004.165.1 0.26 +0.6
159,935 + -0.1
159,936 - -0.3
159,981 + Xcc-8004.166.1 0.13 -1.6
159,981 + Xcc-8004.166.1 0.13 -0.9
159,981 + Xcc-8004.166.1 0.13 -1.1
160,009 + Xcc-8004.166.1 0.24 -0.6
160,043 - Xcc-8004.166.1 0.37 -0.3
160,050 - Xcc-8004.166.1 0.40 -0.7
160,100 + Xcc-8004.166.1 0.59 -0.4
160,101 - Xcc-8004.166.1 0.60 -1.6
160,101 - Xcc-8004.166.1 0.60 +0.9
160,101 - Xcc-8004.166.1 0.60 +0.5
160,167 - Xcc-8004.166.1 0.85 -0.4
160,167 - Xcc-8004.166.1 0.85 +0.7
160,169 + Xcc-8004.166.1 0.86 -0.6
160,170 - Xcc-8004.166.1 0.86 +0.3
160,255 + +0.2
160,280 + -0.6
160,306 - +1.6
160,306 - -0.2
160,481 + +1.5
160,487 + -0.0
160,527 + +0.0
160,527 + -0.7
160,527 + +0.3
160,528 - +0.4
160,528 - -0.8
160,558 + -0.0
160,590 - -1.2
160,596 - +0.8
160,637 - +1.3
160,648 + +0.5
160,685 + -0.9
160,685 + +0.2
160,686 - -1.5
160,686 - -0.4
160,824 + Xcc-8004.168.1 0.16 -0.6
160,824 + Xcc-8004.168.1 0.16 +0.2
160,824 + Xcc-8004.168.1 0.16 +0.9
160,825 - Xcc-8004.168.1 0.17 -1.2
160,825 - Xcc-8004.168.1 0.17 -1.1
160,827 + Xcc-8004.168.1 0.17 -1.7
160,828 - Xcc-8004.168.1 0.17 -1.8
160,842 - Xcc-8004.168.1 0.19 -1.1
160,847 + Xcc-8004.168.1 0.20 +1.0
160,847 + Xcc-8004.168.1 0.20 +0.2
160,851 + Xcc-8004.168.1 0.20 -1.1
160,851 + Xcc-8004.168.1 0.20 -1.4
160,851 + Xcc-8004.168.1 0.20 +0.7
160,851 + Xcc-8004.168.1 0.20 -0.3
160,852 - Xcc-8004.168.1 0.20 +1.7
160,852 - Xcc-8004.168.1 0.20 -0.3
160,853 + Xcc-8004.168.1 0.21 -0.1
160,853 + Xcc-8004.168.1 0.21 -0.9
160,853 + Xcc-8004.168.1 0.21 +0.7
160,854 - Xcc-8004.168.1 0.21 -0.2
160,854 - Xcc-8004.168.1 0.21 +1.6
160,854 - Xcc-8004.168.1 0.21 -0.7
160,854 - Xcc-8004.168.1 0.21 -0.8
160,854 - Xcc-8004.168.1 0.21 -0.4
160,854 - Xcc-8004.168.1 0.21 -0.3
160,919 + Xcc-8004.168.1 0.30 -0.1
160,919 + Xcc-8004.168.1 0.30 +0.2
160,920 - Xcc-8004.168.1 0.30 -0.2
160,926 + Xcc-8004.168.1 0.31 -0.0
160,926 + Xcc-8004.168.1 0.31 -1.4
160,927 - Xcc-8004.168.1 0.31 +1.1
161,011 + Xcc-8004.168.1 0.43 +0.1
161,012 - Xcc-8004.168.1 0.43 -1.7
161,129 + Xcc-8004.168.1 0.60 +0.9
161,129 + Xcc-8004.168.1 0.60 -0.6
161,129 + Xcc-8004.168.1 0.60 -1.0
161,129 + Xcc-8004.168.1 0.60 -0.1
161,130 - Xcc-8004.168.1 0.60 -1.9
161,130 - Xcc-8004.168.1 0.60 +0.7
161,147 + Xcc-8004.168.1 0.63 +1.5
161,148 - Xcc-8004.168.1 0.63 +0.3
161,155 + Xcc-8004.168.1 0.64 -0.4

Or see this region's nucleotide sequence