Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27565

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
6,132,421	+				-0.0
6,132,421	+				+0.4
6,132,421	+				-3.6
6,132,421	+				+0.3
6,132,421	+				-0.6
6,132,421	+				+0.8
6,132,421	+				-1.0
6,132,421	+				-0.7
6,132,421	+				-0.3
6,132,422	-				-0.0
6,132,422	-				-1.7
6,132,422	-				-0.1
6,132,422	-				-0.8
6,132,422	-				-1.3
6,132,422	-				+0.3
6,132,422	-				-0.5
6,132,422	-				+1.8
6,132,422	-				+0.1
6,132,422	-				-0.4
6,132,422	-				-0.9
6,132,422	-				+0.8
6,132,422	-				-0.2
6,132,422	-				+0.3
6,132,422	-				-0.8
6,132,422	-				+0.7
6,132,422	-				+0.3
6,132,456	+				-0.2
6,132,484	+				-1.3
6,132,485	-				-1.3
6,132,485	-				+1.1
6,132,601	+		PFLU_RS27560	0.17	+0.5
6,132,602	-		PFLU_RS27560	0.17	-0.2
6,132,602	-		PFLU_RS27560	0.17	-2.3
6,132,602	-		PFLU_RS27560	0.17	+1.9
6,132,602	-		PFLU_RS27560	0.17	-0.3
6,132,707	-		PFLU_RS27560	0.30	-0.5
6,132,707	-		PFLU_RS27560	0.30	-0.0
6,132,742	+		PFLU_RS27560	0.34	+1.4
6,132,742	+		PFLU_RS27560	0.34	+0.3
6,132,742	+		PFLU_RS27560	0.34	-3.2
6,132,742	+		PFLU_RS27560	0.34	-0.5
6,132,742	+		PFLU_RS27560	0.34	+0.5
6,132,743	-		PFLU_RS27560	0.34	+0.8
6,132,743	-		PFLU_RS27560	0.34	+0.3
6,132,743	-		PFLU_RS27560	0.34	-0.7
6,132,790	+		PFLU_RS27560	0.40	-1.8
6,132,790	+		PFLU_RS27560	0.40	-1.0
6,132,790	+		PFLU_RS27560	0.40	-0.9
6,132,790	+		PFLU_RS27560	0.40	-0.4
6,132,790	+		PFLU_RS27560	0.40	-0.4
6,132,791	-		PFLU_RS27560	0.41	-2.4
6,132,791	-		PFLU_RS27560	0.41	-0.2
6,132,791	-		PFLU_RS27560	0.41	-1.0
6,132,791	-		PFLU_RS27560	0.41	-0.1
6,132,791	-		PFLU_RS27560	0.41	-0.4
6,132,795	+		PFLU_RS27560	0.41	+0.3
6,132,795	+		PFLU_RS27560	0.41	-1.1
6,132,796	-		PFLU_RS27560	0.41	+0.6
6,132,796	-		PFLU_RS27560	0.41	-1.1
6,132,796	-		PFLU_RS27560	0.41	+0.4
6,132,796	-		PFLU_RS27560	0.41	+2.5
6,132,796	-		PFLU_RS27560	0.41	+0.0
6,132,901	+		PFLU_RS27560	0.54	-0.4
6,132,901	+		PFLU_RS27560	0.54	+0.6
6,132,901	+		PFLU_RS27560	0.54	+0.1
6,132,901	+		PFLU_RS27560	0.54	+0.4
6,132,901	+		PFLU_RS27560	0.54	-0.3
6,132,901	+		PFLU_RS27560	0.54	+1.8
6,132,902	-		PFLU_RS27560	0.54	-0.8
6,132,902	-		PFLU_RS27560	0.54	-3.9
6,132,902	-		PFLU_RS27560	0.54	-0.3
6,132,902	-		PFLU_RS27560	0.54	-0.7
6,132,902	-		PFLU_RS27560	0.54	-0.6
6,132,978	+		PFLU_RS27560	0.64	-0.8
6,132,978	+		PFLU_RS27560	0.64	-0.0
6,133,042	+		PFLU_RS27560	0.72	-1.3
6,133,042	+		PFLU_RS27560	0.72	+0.8
6,133,042	+		PFLU_RS27560	0.72	-0.5
6,133,042	+		PFLU_RS27560	0.72	+0.5
6,133,042	+		PFLU_RS27560	0.72	-0.2
6,133,042	+		PFLU_RS27560	0.72	-0.5
6,133,042	+		PFLU_RS27560	0.72	+2.3
6,133,042	+		PFLU_RS27560	0.72	-0.0
6,133,042	+		PFLU_RS27560	0.72	-0.5
6,133,042	+		PFLU_RS27560	0.72	-0.8
6,133,042	+		PFLU_RS27560	0.72	-0.0
6,133,042	+		PFLU_RS27560	0.72	-1.3
6,133,042	+		PFLU_RS27560	0.72	-1.9
6,133,042	+		PFLU_RS27560	0.72	+0.4
6,133,042	+		PFLU_RS27560	0.72	-0.8
6,133,042	+		PFLU_RS27560	0.72	-1.5
6,133,042	+		PFLU_RS27560	0.72	-1.1
6,133,042	+		PFLU_RS27560	0.72	-0.1
6,133,043	-		PFLU_RS27560	0.72	-0.6
6,133,043	-		PFLU_RS27560	0.72	-2.6
6,133,043	-		PFLU_RS27560	0.72	+1.2
6,133,043	-		PFLU_RS27560	0.72	-2.0
6,133,043	-		PFLU_RS27560	0.72	+0.9
6,133,043	-		PFLU_RS27560	0.72	-0.9
6,133,043	-		PFLU_RS27560	0.72	+0.4
6,133,043	-		PFLU_RS27560	0.72	+0.1
6,133,043	-		PFLU_RS27560	0.72	-0.1
6,133,043	-		PFLU_RS27560	0.72	-0.4
6,133,043	-		PFLU_RS27560	0.72	+0.6
6,133,043	-		PFLU_RS27560	0.72	+0.3
6,133,043	-		PFLU_RS27560	0.72	+0.1
6,133,043	-		PFLU_RS27560	0.72	+0.2
6,133,043	-		PFLU_RS27560	0.72	+0.2
6,133,043	-		PFLU_RS27560	0.72	+1.3
6,133,051	+		PFLU_RS27560	0.73	-3.6
6,133,051	+		PFLU_RS27560	0.73	-1.0
6,133,052	-		PFLU_RS27560	0.73	-0.5
6,133,060	+		PFLU_RS27560	0.74	-1.1
6,133,060	+		PFLU_RS27560	0.74	+2.2
6,133,060	+		PFLU_RS27560	0.74	-1.2
6,133,060	+		PFLU_RS27560	0.74	+1.1
6,133,060	+		PFLU_RS27560	0.74	-1.3
6,133,060	+		PFLU_RS27560	0.74	-2.0
6,133,060	+		PFLU_RS27560	0.74	+0.4
6,133,060	+		PFLU_RS27560	0.74	-2.0
6,133,060	+		PFLU_RS27560	0.74	-0.3
6,133,061	-		PFLU_RS27560	0.74	-0.4
6,133,061	-		PFLU_RS27560	0.74	-2.5
6,133,061	-		PFLU_RS27560	0.74	+0.4
6,133,061	-		PFLU_RS27560	0.74	-1.0
6,133,061	-		PFLU_RS27560	0.74	-2.9
6,133,061	-		PFLU_RS27560	0.74	-1.9
6,133,061	-		PFLU_RS27560	0.74	+1.2
6,133,061	-		PFLU_RS27560	0.74	-0.2
6,133,061	-		PFLU_RS27560	0.74	-0.5
6,133,061	-		PFLU_RS27560	0.74	-1.7
6,133,061	-		PFLU_RS27560	0.74	+0.8
6,133,061	-		PFLU_RS27560	0.74	-1.3
6,133,061	-		PFLU_RS27560	0.74	+0.3
6,133,061	-		PFLU_RS27560	0.74	+0.9
6,133,061	-		PFLU_RS27560	0.74	-3.4
6,133,087	+		PFLU_RS27560	0.78	-1.5
6,133,087	+		PFLU_RS27560	0.78	+1.0
6,133,087	+		PFLU_RS27560	0.78	-1.5
6,133,088	-		PFLU_RS27560	0.78	-1.4
6,133,088	-		PFLU_RS27560	0.78	-3.0
6,133,213	+				-0.2
6,133,213	+				+0.9
6,133,214	-				+1.3
6,133,238	+				+1.0
6,133,238	+				-2.5
6,133,238	+				+0.1
6,133,238	+				+0.9
6,133,239	-				+0.5
6,133,239	-				+0.3
6,133,240	+				+0.3
6,133,240	+				+0.5
6,133,240	+				+0.9
6,133,240	+				-1.4
6,133,240	+				-0.5
6,133,240	+				+0.3
6,133,240	+				-0.0
6,133,240	+				-0.2
6,133,240	+				-3.0
6,133,240	+				+1.5
6,133,240	+				-3.7
6,133,240	+				-1.0
6,133,240	+				-1.5
6,133,240	+				-0.8
6,133,240	+				-0.3
6,133,241	-				+0.8
6,133,241	-				+0.8
6,133,241	-				+0.3
6,133,241	-				+0.2
6,133,241	-				-0.7
6,133,241	-				-2.8
6,133,241	-				-1.5
6,133,241	-				-0.1
6,133,241	-				+0.1
6,133,241	-				+1.0
6,133,241	-				+1.1
6,133,241	-				-1.8
6,133,241	-				+1.1
6,133,241	-				-0.3
6,133,241	-				+1.0
6,133,241	-				-0.2
6,133,241	-				-0.1
6,133,290	-				-0.5
6,133,290	-				-0.2
6,133,305	+				+0.8
6,133,305	+				+0.3
6,133,305	+				+1.1
6,133,305	+				-0.1
6,133,305	+				-0.9
6,133,305	+				+0.9
6,133,306	-				-1.0
6,133,306	-				+0.4
6,133,306	-				-2.2
6,133,306	-				-0.2
6,133,306	-				+0.3
6,133,306	-				+0.0
6,133,545	+				-0.9
6,133,545	+				+0.2
6,133,545	+				+0.0
6,133,545	+				+0.5
6,133,545	+				+1.2
6,133,545	+				+1.1
6,133,545	+				+0.2
6,133,546	-				-0.0
6,133,546	-				-0.2
6,133,546	-				+1.0
6,133,546	-				-2.6
6,133,890	+		PFLU_RS27565	0.24	+0.4
6,133,890	+		PFLU_RS27565	0.24	-3.0
6,133,890	+		PFLU_RS27565	0.24	+0.0
6,133,891	-		PFLU_RS27565	0.24	+0.7
6,133,891	-		PFLU_RS27565	0.24	+2.9
6,133,891	-		PFLU_RS27565	0.24	-2.5
6,133,891	-		PFLU_RS27565	0.24	-0.0
6,134,043	+		PFLU_RS27565	0.31	-0.0
6,134,043	+		PFLU_RS27565	0.31	+0.1
6,134,044	-		PFLU_RS27565	0.31	+1.5
6,134,068	+		PFLU_RS27565	0.32	+1.0
6,134,068	+		PFLU_RS27565	0.32	-0.7
6,134,068	+		PFLU_RS27565	0.32	-0.0
6,134,068	+		PFLU_RS27565	0.32	-0.7
6,134,068	+		PFLU_RS27565	0.32	-0.0
6,134,068	+		PFLU_RS27565	0.32	-0.7
6,134,068	+		PFLU_RS27565	0.32	+0.5
6,134,068	+		PFLU_RS27565	0.32	-0.6
6,134,068	+		PFLU_RS27565	0.32	-0.0
6,134,068	+		PFLU_RS27565	0.32	+0.8
6,134,068	+		PFLU_RS27565	0.32	-1.4
6,134,068	+		PFLU_RS27565	0.32	+1.5
6,134,068	+		PFLU_RS27565	0.32	-1.0
6,134,069	-		PFLU_RS27565	0.32	-3.9
6,134,069	-		PFLU_RS27565	0.32	-1.3
6,134,069	-		PFLU_RS27565	0.32	+0.1
6,134,069	-		PFLU_RS27565	0.32	+1.2
6,134,069	-		PFLU_RS27565	0.32	-1.6
6,134,088	-		PFLU_RS27565	0.33	-2.5
6,134,208	+		PFLU_RS27565	0.38	-1.3
6,134,208	+		PFLU_RS27565	0.38	+0.7
6,134,208	+		PFLU_RS27565	0.38	+0.3
6,134,208	+		PFLU_RS27565	0.38	-1.3
6,134,208	+		PFLU_RS27565	0.38	+1.2
6,134,209	-		PFLU_RS27565	0.38	+0.1
6,134,209	-		PFLU_RS27565	0.38	-0.4
6,134,209	-		PFLU_RS27565	0.38	+0.0
6,134,209	-		PFLU_RS27565	0.38	+1.9
6,134,209	-		PFLU_RS27565	0.38	-1.1
6,134,246	+		PFLU_RS27565	0.40	-0.2
6,134,246	+		PFLU_RS27565	0.40	+1.9
6,134,246	+		PFLU_RS27565	0.40	-1.5
6,134,255	+		PFLU_RS27565	0.40	-1.1
6,134,255	+		PFLU_RS27565	0.40	+0.7
6,134,255	+		PFLU_RS27565	0.40	+0.1
6,134,256	-		PFLU_RS27565	0.40	+0.6
6,134,256	-		PFLU_RS27565	0.40	-1.3
6,134,256	-		PFLU_RS27565	0.40	+1.3
6,134,256	-		PFLU_RS27565	0.40	-1.1
6,134,256	-		PFLU_RS27565	0.40	+0.4
6,134,629	+		PFLU_RS27565	0.56	+0.1
6,134,630	-		PFLU_RS27565	0.56	-0.8
6,134,630	-		PFLU_RS27565	0.56	+0.3
6,134,685	+		PFLU_RS27565	0.58	+0.9
6,134,685	+		PFLU_RS27565	0.58	+0.3
6,134,685	+		PFLU_RS27565	0.58	+0.5
6,134,686	-		PFLU_RS27565	0.58	-1.9
6,134,686	-		PFLU_RS27565	0.58	+0.6
6,134,686	-		PFLU_RS27565	0.58	+1.7
6,134,686	-		PFLU_RS27565	0.58	+0.2
6,134,686	-		PFLU_RS27565	0.58	-1.3
6,134,728	+		PFLU_RS27565	0.60	+0.3
6,134,728	+		PFLU_RS27565	0.60	-0.6
6,134,728	+		PFLU_RS27565	0.60	-0.4
6,134,728	+		PFLU_RS27565	0.60	+0.8
6,134,728	+		PFLU_RS27565	0.60	-1.0
6,134,728	+		PFLU_RS27565	0.60	+0.4
6,134,728	+		PFLU_RS27565	0.60	+1.8
6,134,728	+		PFLU_RS27565	0.60	+0.6
6,134,729	-		PFLU_RS27565	0.60	+0.1
6,134,729	-		PFLU_RS27565	0.60	+0.0
6,134,729	-		PFLU_RS27565	0.60	-0.2
6,134,729	-		PFLU_RS27565	0.60	-0.5
6,134,729	-		PFLU_RS27565	0.60	+0.4
6,134,729	-		PFLU_RS27565	0.60	+0.5
6,134,729	-		PFLU_RS27565	0.60	+0.9
6,134,729	-		PFLU_RS27565	0.60	+0.4
6,134,729	-		PFLU_RS27565	0.60	-1.0
6,134,729	-		PFLU_RS27565	0.60	-2.1
6,134,923	+		PFLU_RS27565	0.69	+2.0
6,134,923	+		PFLU_RS27565	0.69	+0.5
6,135,070	+		PFLU_RS27565	0.75	-0.6
6,135,095	+		PFLU_RS27565	0.76	+0.9
6,135,095	+		PFLU_RS27565	0.76	+1.1
6,135,095	+		PFLU_RS27565	0.76	-0.6
6,135,095	+		PFLU_RS27565	0.76	-1.6
6,135,095	+		PFLU_RS27565	0.76	+1.4
6,135,095	+		PFLU_RS27565	0.76	-2.8
6,135,095	+		PFLU_RS27565	0.76	-0.7
6,135,095	+		PFLU_RS27565	0.76	+0.4
6,135,095	+		PFLU_RS27565	0.76	+1.2
6,135,095	+		PFLU_RS27565	0.76	-0.8
6,135,096	-		PFLU_RS27565	0.76	-0.3
6,135,096	-		PFLU_RS27565	0.76	+0.2
6,135,096	-		PFLU_RS27565	0.76	-0.6
6,135,096	-		PFLU_RS27565	0.76	-2.8
6,135,096	-		PFLU_RS27565	0.76	-0.7
6,135,096	-		PFLU_RS27565	0.76	+0.7
6,135,096	-		PFLU_RS27565	0.76	-1.7
6,135,096	-		PFLU_RS27565	0.76	-0.7
6,135,096	-		PFLU_RS27565	0.76	-0.1
6,135,222	+		PFLU_RS27565	0.81	+0.0
6,135,223	-		PFLU_RS27565	0.81	-0.3
6,135,239	-		PFLU_RS27565	0.82	-1.0
6,135,239	-		PFLU_RS27565	0.82	-0.6
6,135,263	-		PFLU_RS27565	0.83	-1.9
6,135,283	+		PFLU_RS27565	0.84	-0.0
6,135,283	+		PFLU_RS27565	0.84	-2.4
6,135,283	+		PFLU_RS27565	0.84	+0.2
6,135,283	+		PFLU_RS27565	0.84	-1.2
6,135,284	-		PFLU_RS27565	0.84	-1.3
6,135,284	-		PFLU_RS27565	0.84	+1.7
6,135,284	-		PFLU_RS27565	0.84	-0.9
6,135,304	+		PFLU_RS27565	0.85	-0.5
6,135,305	-		PFLU_RS27565	0.85	+0.2
6,135,305	-		PFLU_RS27565	0.85	-0.2
6,135,305	-		PFLU_RS27565	0.85	-0.5
6,135,511	-				-1.5
6,135,545	+				-1.0
6,135,719	+				-3.0
6,135,719	+				+2.1
6,135,720	-				+0.2
6,135,728	+				+0.4
6,135,728	+				+1.7
6,135,728	+				+2.4
6,135,728	+				+0.3
6,135,729	-				+0.3
6,135,765	+				-0.0
6,135,765	+				+1.4
6,135,765	+				+0.2
6,135,765	+				-0.5
6,135,765	+				-0.0
6,135,765	+				-1.0
6,135,765	+				-2.6
6,135,765	+				-0.2
6,135,765	+				+1.0
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