Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19540

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
4,418,348	+		PFLU_RS19535	0.49	+1.0
4,418,348	+		PFLU_RS19535	0.49	+1.0
4,418,349	-		PFLU_RS19535	0.49	+0.8
4,418,387	+		PFLU_RS19535	0.51	-0.7
4,418,387	+		PFLU_RS19535	0.51	-2.2
4,418,387	+		PFLU_RS19535	0.51	+1.2
4,418,387	+		PFLU_RS19535	0.51	-0.3
4,418,387	+		PFLU_RS19535	0.51	-0.4
4,418,387	+		PFLU_RS19535	0.51	+0.7
4,418,388	-		PFLU_RS19535	0.52	-0.7
4,418,388	-		PFLU_RS19535	0.52	-1.0
4,418,388	-		PFLU_RS19535	0.52	+0.6
4,418,388	-		PFLU_RS19535	0.52	-2.0
4,418,388	-		PFLU_RS19535	0.52	-2.4
4,418,388	-		PFLU_RS19535	0.52	-3.1
4,418,388	-		PFLU_RS19535	0.52	-0.3
4,418,388	-		PFLU_RS19535	0.52	-1.2
4,418,388	-		PFLU_RS19535	0.52	-2.6
4,418,388	-		PFLU_RS19535	0.52	+0.6
4,418,522	+		PFLU_RS19535	0.60	-1.9
4,418,522	+		PFLU_RS19535	0.60	-2.1
4,418,522	+		PFLU_RS19535	0.60	-0.3
4,418,522	+		PFLU_RS19535	0.60	-0.4
4,418,523	-		PFLU_RS19535	0.60	-0.7
4,418,523	-		PFLU_RS19535	0.60	+1.0
4,418,523	-		PFLU_RS19535	0.60	+0.3
4,418,523	-		PFLU_RS19535	0.60	+1.4
4,418,525	+		PFLU_RS19535	0.61	+0.3
4,418,525	+		PFLU_RS19535	0.61	+1.2
4,418,525	+		PFLU_RS19535	0.61	-0.4
4,418,526	-		PFLU_RS19535	0.61	+0.6
4,418,543	-		PFLU_RS19535	0.62	+1.6
4,418,543	-		PFLU_RS19535	0.62	-0.8
4,418,578	-		PFLU_RS19535	0.64	-1.7
4,418,695	+		PFLU_RS19535	0.72	-0.9
4,418,747	+		PFLU_RS19535	0.75	-0.2
4,418,747	+		PFLU_RS19535	0.75	-0.2
4,418,747	+		PFLU_RS19535	0.75	-1.7
4,418,748	-		PFLU_RS19535	0.75	+0.9
4,418,748	-		PFLU_RS19535	0.75	+1.3
4,418,748	-		PFLU_RS19535	0.75	-0.7
4,419,039	-				+1.4
4,419,099	+				-1.2
4,419,100	-				-0.2
4,419,100	-				-0.6
4,419,135	+				+0.9
4,419,135	+				+0.1
4,419,135	+				+0.5
4,419,135	+				+1.2
4,419,135	+				+0.9
4,419,135	+				-1.6
4,419,135	+				-1.9
4,419,135	+				-0.0
4,419,135	+				+0.6
4,419,135	+				+1.3
4,419,136	-				+0.4
4,419,136	-				-2.5
4,419,136	-				+0.5
4,419,136	-				-0.3
4,419,136	-				-1.0
4,419,136	-				-2.5
4,419,139	+				-1.4
4,419,139	+				-1.4
4,419,140	-				+0.4
4,419,185	-				-0.2
4,419,235	+				+0.7
4,419,235	+				-1.4
4,419,235	+				-0.0
4,419,235	+				+1.1
4,419,235	+				+0.3
4,419,235	+				+0.9
4,419,235	+				+0.3
4,419,235	+				-0.0
4,419,236	-				+0.2
4,419,236	-				+0.4
4,419,236	-				+0.1
4,419,236	-				-0.1
4,419,236	-				-1.3
4,419,256	+				-1.1
4,419,256	+				-2.1
4,419,257	-				-0.4
4,419,302	+				+0.3
4,419,302	+				-0.0
4,419,302	+				-0.9
4,419,303	-				-3.2
4,419,303	-				-0.2
4,419,303	-				-0.1
4,419,303	-				-2.1
4,419,305	+				-0.7
4,419,305	+				+1.9
4,419,305	+				+0.6
4,419,305	+				+0.3
4,419,305	+				-1.2
4,419,306	-				+1.4
4,419,306	-				-0.7
4,419,306	-				+1.3
4,419,306	-				+0.8
4,419,306	-				-0.0
4,419,306	-				-1.4
4,419,306	-				-0.9
4,419,306	-				-0.7
4,419,306	-				+0.6
4,419,306	-				+2.0
4,419,306	-				+0.8
4,419,461	+		PFLU_RS19540	0.21	-2.2
4,419,461	+		PFLU_RS19540	0.21	-1.4
4,419,462	-		PFLU_RS19540	0.21	+0.3
4,419,462	-		PFLU_RS19540	0.21	-1.1
4,419,462	-		PFLU_RS19540	0.21	-2.7
4,419,462	-		PFLU_RS19540	0.21	+0.0
4,419,496	+		PFLU_RS19540	0.25	+1.0
4,419,496	+		PFLU_RS19540	0.25	+1.2
4,419,497	-		PFLU_RS19540	0.25	+1.9
4,419,646	+		PFLU_RS19540	0.39	-0.3
4,419,646	+		PFLU_RS19540	0.39	-0.5
4,419,700	+		PFLU_RS19540	0.44	-1.4
4,419,700	+		PFLU_RS19540	0.44	-0.5
4,419,700	+		PFLU_RS19540	0.44	+0.9
4,419,701	-		PFLU_RS19540	0.44	-0.0
4,419,701	-		PFLU_RS19540	0.44	+0.6
4,419,701	-		PFLU_RS19540	0.44	+0.5
4,419,704	-		PFLU_RS19540	0.44	-2.8
4,419,704	-		PFLU_RS19540	0.44	+2.9
4,419,704	-		PFLU_RS19540	0.44	+1.6
4,419,704	-		PFLU_RS19540	0.44	-1.2
4,419,704	-		PFLU_RS19540	0.44	-1.0
4,419,706	+		PFLU_RS19540	0.44	+1.1
4,419,706	+		PFLU_RS19540	0.44	+1.0
4,419,706	+		PFLU_RS19540	0.44	-1.2
4,419,707	-		PFLU_RS19540	0.44	+0.4
4,419,707	-		PFLU_RS19540	0.44	+1.6
4,419,707	-		PFLU_RS19540	0.44	-2.9
4,419,707	-		PFLU_RS19540	0.44	+0.7
4,419,707	-		PFLU_RS19540	0.44	-0.4
4,419,707	-		PFLU_RS19540	0.44	+0.4
4,419,707	-		PFLU_RS19540	0.44	+2.2
4,419,739	+		PFLU_RS19540	0.47	-0.2
4,419,952	+		PFLU_RS19540	0.67	-0.4
4,420,071	+		PFLU_RS19540	0.79	-0.0
4,420,071	+		PFLU_RS19540	0.79	-0.6
4,420,071	+		PFLU_RS19540	0.79	+0.6
4,420,072	-		PFLU_RS19540	0.79	-0.4
4,420,108	+		PFLU_RS19540	0.82	-1.8
4,420,108	+		PFLU_RS19540	0.82	-1.7
4,420,108	+		PFLU_RS19540	0.82	-0.5
4,420,108	+		PFLU_RS19540	0.82	-0.8
4,420,108	+		PFLU_RS19540	0.82	+0.3
4,420,108	+		PFLU_RS19540	0.82	+1.0
4,420,108	+		PFLU_RS19540	0.82	+0.9
4,420,109	-		PFLU_RS19540	0.82	-0.1
4,420,260	+				-3.1
4,420,260	+				+0.3
4,420,261	-				+0.3
4,420,337	+				+0.8
4,420,337	+				-0.1
4,420,337	+				+0.6
4,420,518	+				+0.4
4,420,518	+				-1.0
4,420,518	+				-3.1
4,420,518	+				+0.8
4,420,518	+				-0.9
4,420,518	+				+1.1
4,420,518	+				+1.1
4,420,518	+				+1.1
4,420,518	+				-2.4
4,420,518	+				-0.8
4,420,518	+				-1.0
4,420,518	+				+0.3
4,420,518	+				+0.3
4,420,518	+				+0.2
4,420,519	-				+0.5
4,420,519	-				-0.4
4,420,519	-				-0.1
4,420,519	-				-0.2
4,420,519	-				-3.1
4,420,519	-				+0.6
4,420,519	-				-1.1
4,420,519	-				-1.4
4,420,519	-				+0.2
4,420,519	-				-0.2
4,420,519	-				+0.3
4,420,519	-				+0.7
4,420,519	-				+1.2
4,420,552	-		PFLU_RS19545	0.11	-1.0
4,420,641	+		PFLU_RS19545	0.14	-0.5
4,420,642	-		PFLU_RS19545	0.14	+0.4
4,420,677	+		PFLU_RS19545	0.16	+0.6
4,420,756	-		PFLU_RS19545	0.19	-0.4
4,420,923	-		PFLU_RS19545	0.26	-2.9
4,420,923	-		PFLU_RS19545	0.26	-0.4
4,421,096	+		PFLU_RS19545	0.33	+0.1
4,421,097	-		PFLU_RS19545	0.33	-0.3
4,421,245	+		PFLU_RS19545	0.39	-1.7
4,421,245	+		PFLU_RS19545	0.39	-0.6
4,421,245	+		PFLU_RS19545	0.39	+1.0
4,421,245	+		PFLU_RS19545	0.39	-1.3
4,421,246	-		PFLU_RS19545	0.39	-0.1
4,421,249	+		PFLU_RS19545	0.39	-1.3
4,421,249	+		PFLU_RS19545	0.39	+0.4
4,421,283	+		PFLU_RS19545	0.40	-3.3
4,421,284	-		PFLU_RS19545	0.40	-1.3
4,421,284	-		PFLU_RS19545	0.40	+0.3