Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12455

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs
2,784,885	+		PFLU_RS12450	0.52	-2.1
2,784,885	+		PFLU_RS12450	0.52	-1.2
2,784,885	+		PFLU_RS12450	0.52	+0.8
2,784,886	-		PFLU_RS12450	0.52	+0.3
2,784,886	-		PFLU_RS12450	0.52	-0.0
2,784,957	+		PFLU_RS12450	0.57	-1.0
2,784,957	+		PFLU_RS12450	0.57	-1.9
2,784,957	+		PFLU_RS12450	0.57	+0.4
2,784,957	+		PFLU_RS12450	0.57	-0.9
2,784,957	+		PFLU_RS12450	0.57	-2.8
2,784,957	+		PFLU_RS12450	0.57	-1.9
2,784,957	+		PFLU_RS12450	0.57	-1.0
2,784,957	+		PFLU_RS12450	0.57	-0.0
2,784,957	+		PFLU_RS12450	0.57	-0.3
2,784,957	+		PFLU_RS12450	0.57	-3.1
2,784,957	+		PFLU_RS12450	0.57	-2.5
2,784,957	+		PFLU_RS12450	0.57	+1.0
2,784,957	+		PFLU_RS12450	0.57	+0.4
2,784,957	+		PFLU_RS12450	0.57	+2.3
2,784,957	+		PFLU_RS12450	0.57	-1.9
2,784,957	+		PFLU_RS12450	0.57	-2.4
2,784,958	-		PFLU_RS12450	0.57	+0.4
2,784,958	-		PFLU_RS12450	0.57	+1.6
2,784,958	-		PFLU_RS12450	0.57	+1.3
2,784,958	-		PFLU_RS12450	0.57	+2.6
2,784,958	-		PFLU_RS12450	0.57	-1.0
2,784,958	-		PFLU_RS12450	0.57	-2.4
2,784,958	-		PFLU_RS12450	0.57	+1.3
2,784,958	-		PFLU_RS12450	0.57	-1.3
2,784,958	-		PFLU_RS12450	0.57	-1.7
2,784,958	-		PFLU_RS12450	0.57	+1.8
2,784,958	-		PFLU_RS12450	0.57	+3.3
2,784,958	-		PFLU_RS12450	0.57	+0.4
2,784,958	-		PFLU_RS12450	0.57	+1.1
2,784,958	-		PFLU_RS12450	0.57	-0.4
2,784,958	-		PFLU_RS12450	0.57	+0.4
2,785,013	-		PFLU_RS12450	0.60	-1.0
2,785,052	-		PFLU_RS12450	0.62	-2.6
2,785,086	+		PFLU_RS12450	0.64	-1.4
2,785,086	+		PFLU_RS12450	0.64	+1.8
2,785,087	-		PFLU_RS12450	0.64	-0.7
2,785,087	-		PFLU_RS12450	0.64	-0.4
2,785,087	-		PFLU_RS12450	0.64	+0.4
2,785,087	-		PFLU_RS12450	0.64	-0.2
2,785,087	-		PFLU_RS12450	0.64	-0.9
2,785,087	-		PFLU_RS12450	0.64	-0.4
2,785,087	-		PFLU_RS12450	0.64	-2.0
2,785,090	-		PFLU_RS12450	0.65	-0.9
2,785,222	-		PFLU_RS12450	0.73	-0.1
2,785,222	-		PFLU_RS12450	0.73	+0.1
2,785,222	-		PFLU_RS12450	0.73	-0.0
2,785,431	+		PFLU_RS12450	0.85	+1.2
2,785,431	+		PFLU_RS12450	0.85	-0.0
2,785,431	+		PFLU_RS12450	0.85	+1.8
2,785,431	+		PFLU_RS12450	0.85	-0.1
2,785,431	+		PFLU_RS12450	0.85	-1.2
2,785,431	+		PFLU_RS12450	0.85	+1.0
2,785,431	+		PFLU_RS12450	0.85	+0.1
2,785,431	+		PFLU_RS12450	0.85	-1.7
2,785,431	+		PFLU_RS12450	0.85	-1.4
2,785,431	+		PFLU_RS12450	0.85	-2.9
2,785,431	+		PFLU_RS12450	0.85	-1.7
2,785,432	-		PFLU_RS12450	0.85	+0.3
2,785,432	-		PFLU_RS12450	0.85	-2.2
2,785,432	-		PFLU_RS12450	0.85	+1.4
2,785,432	-		PFLU_RS12450	0.85	-0.2
2,785,432	-		PFLU_RS12450	0.85	-2.3
2,785,432	-		PFLU_RS12450	0.85	-0.2
2,785,432	-		PFLU_RS12450	0.85	-0.0
2,785,432	-		PFLU_RS12450	0.85	-2.1
2,785,540	+				-0.3
2,785,541	-				-0.3
2,785,675	+				-1.7
2,785,675	+				-1.4
2,785,675	+				+0.2
2,785,675	+				-1.4
2,785,675	+				-1.0
2,785,676	-				-0.6
2,785,679	+				+0.2
2,785,679	+				+0.4
2,785,679	+				+1.0
2,785,679	+				-1.1
2,785,679	+				+1.0
2,785,679	+				+0.8
2,785,679	+				+1.2
2,785,680	-				-0.3
2,785,680	-				-2.2
2,785,680	-				+1.3
2,785,680	-				-1.0
2,785,680	-				-1.0
2,785,680	-				-2.8
2,785,680	-				-1.4
2,785,680	-				+0.5
2,785,754	+				+0.5
2,785,754	+				+1.4
2,785,758	+				+0.4
2,785,758	+				+0.6
2,785,759	-				-0.5
2,785,759	-				+0.8
2,785,825	+				-1.2
2,785,826	-				-0.1
2,785,856	+				-0.0
2,785,856	+				+0.8
2,785,856	+				+1.5
2,785,856	+				-0.0
2,785,856	+				+1.1
2,785,857	-				-2.0
2,785,857	-				-0.2
2,785,857	-				+1.2
2,785,857	-				-0.7
2,785,897	+				+0.2
2,785,897	+				-0.6
2,785,897	+				+0.3
2,785,897	+				+0.7
2,785,897	+				-0.3
2,785,897	+				+1.0
2,785,897	+				-0.6
2,785,897	+				+1.2
2,785,897	+				+0.1
2,785,897	+				+0.6
2,785,897	+				+1.9
2,785,897	+				-2.0
2,785,897	+				+0.6
2,785,897	+				-0.6
2,785,898	-				-0.6
2,785,898	-				+1.2
2,785,898	-				+0.2
2,785,898	-				-0.9
2,785,898	-				+1.2
2,785,898	-				+2.2
2,785,898	-				-0.6
2,785,898	-				-1.0
2,785,898	-				+0.7
2,785,898	-				-0.8
2,785,898	-				+0.2
2,785,898	-				+0.2
2,785,898	-				-0.7
2,785,898	-				-1.8
2,785,951	+				-1.0
2,785,951	+				-0.4
2,785,951	+				+1.2
2,785,951	+				-1.2
2,785,952	-				-0.4
2,785,969	+		PFLU_RS12455	0.11	+0.3
2,785,970	-		PFLU_RS12455	0.11	-0.2
2,785,970	-		PFLU_RS12455	0.11	-0.7
2,785,970	-		PFLU_RS12455	0.11	+0.3
2,786,032	+		PFLU_RS12455	0.19	+2.5
2,786,032	+		PFLU_RS12455	0.19	+1.3
2,786,032	+		PFLU_RS12455	0.19	-0.9
2,786,032	+		PFLU_RS12455	0.19	-0.3
2,786,033	-		PFLU_RS12455	0.19	-0.8
2,786,033	-		PFLU_RS12455	0.19	-0.4
2,786,033	-		PFLU_RS12455	0.19	-1.8
2,786,053	+		PFLU_RS12455	0.21	-0.9
2,786,053	+		PFLU_RS12455	0.21	+0.4
2,786,053	+		PFLU_RS12455	0.21	+1.9
2,786,053	+		PFLU_RS12455	0.21	-1.0
2,786,054	-		PFLU_RS12455	0.21	-1.6
2,786,054	-		PFLU_RS12455	0.21	-1.2
2,786,054	-		PFLU_RS12455	0.21	+0.3
2,786,054	-		PFLU_RS12455	0.21	-1.1
2,786,054	-		PFLU_RS12455	0.21	-3.1
2,786,054	-		PFLU_RS12455	0.21	-0.5
2,786,054	-		PFLU_RS12455	0.21	+0.2
2,786,054	-		PFLU_RS12455	0.21	+1.1
2,786,054	-		PFLU_RS12455	0.21	-1.2
2,786,054	-		PFLU_RS12455	0.21	+1.3
2,786,101	+		PFLU_RS12455	0.27	+1.6
2,786,101	+		PFLU_RS12455	0.27	-0.2
2,786,114	-		PFLU_RS12455	0.29	+0.5
2,786,138	-		PFLU_RS12455	0.32	-0.0
2,786,203	+		PFLU_RS12455	0.39	-1.8
2,786,203	+		PFLU_RS12455	0.39	+0.7
2,786,204	-		PFLU_RS12455	0.39	-0.2
2,786,204	-		PFLU_RS12455	0.39	-3.0
2,786,452	+		PFLU_RS12455	0.69	+0.4
2,786,453	-		PFLU_RS12455	0.69	+0.4
2,786,519	-		PFLU_RS12455	0.77	-0.5
2,786,519	-		PFLU_RS12455	0.77	-2.3
2,786,542	+		PFLU_RS12455	0.80	-0.7
2,786,543	-		PFLU_RS12455	0.80	+0.7
2,786,543	-		PFLU_RS12455	0.80	+0.4
2,786,704	+				-1.1
2,786,705	-				+0.7
2,786,705	-				+0.5
2,786,719	+				+2.0
2,786,719	+				-3.0
2,786,720	-				+0.9
2,786,791	-				+0.7
2,786,791	-				+1.5
2,786,795	-				-2.9
2,786,795	-				+0.8
2,786,795	-				-0.1
2,786,795	-				-2.3
2,786,795	-				+0.5
2,786,795	-				+1.3
2,786,795	-				-0.2
2,786,795	-				-0.7
2,786,795	-				-0.1
2,786,795	-				+0.1
2,786,865	+				+0.4
2,786,865	+				+1.0
2,786,865	+				-0.6
2,786,865	+				-0.0
2,786,865	+				+1.6
2,786,865	+				-2.2
2,786,993	-				+0.5
2,787,412	+				-0.8
2,787,412	+				+0.4
2,787,412	+				-1.5
2,787,412	+				+0.8
2,787,412	+				-0.5
2,787,412	+				-0.3
2,787,416	+				-0.2
2,787,416	+				-2.6
2,787,416	+				+0.8
2,787,416	+				+0.4
2,787,416	+				-2.2
2,787,416	+				+0.7
2,787,416	+				+1.0
2,787,416	+				+0.6
2,787,416	+				+1.6
2,787,416	+				-0.1
2,787,416	+				-0.0
2,787,416	+				+0.3
2,787,416	+				+1.0
2,787,416	+				+1.4
2,787,420	+				-0.1
2,787,420	+				+1.4
2,787,420	+				+0.4
2,787,420	+				+1.0
2,787,420	+				-1.7
2,787,420	+				+2.0
2,787,420	+				+1.8
2,787,420	+				-1.7
2,787,420	+				+1.1
2,787,420	+				-0.0
2,787,420	+				-2.4
2,787,420	+				-0.0
2,787,613	+				-0.3
2,787,661	-				-2.9