Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20475 and IAI47_20480 are separated by 1 nucleotides IAI47_20480 and IAI47_20485 are separated by 543 nucleotides
IAI47_20475: IAI47_20475 - diguanylate cyclase, at 339,575 to 340,783
_20475
IAI47_20480: IAI47_20480 - YfiR family protein, at 340,785 to 341,339
_20480
IAI47_20485: IAI47_20485 - HTH-type transcriptional regulator MalT, at 341,883 to 344,585
_20485
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.793 kb on + strand, within IAI47_20475 at 339.793 kb on + strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.794 kb on - strand, within IAI47_20475 at 339.848 kb on + strand, within IAI47_20475 at 339.849 kb on - strand, within IAI47_20475 at 339.863 kb on + strand, within IAI47_20475 at 339.875 kb on + strand, within IAI47_20475 at 339.904 kb on + strand, within IAI47_20475 at 339.905 kb on - strand, within IAI47_20475 at 339.910 kb on + strand, within IAI47_20475 at 339.910 kb on + strand, within IAI47_20475 at 339.910 kb on + strand, within IAI47_20475 at 339.911 kb on - strand, within IAI47_20475 at 339.919 kb on + strand, within IAI47_20475 at 339.941 kb on + strand, within IAI47_20475 at 339.941 kb on + strand, within IAI47_20475 at 340.049 kb on - strand, within IAI47_20475 at 340.066 kb on + strand, within IAI47_20475 at 340.067 kb on - strand, within IAI47_20475 at 340.075 kb on + strand, within IAI47_20475 at 340.076 kb on - strand, within IAI47_20475 at 340.076 kb on - strand, within IAI47_20475 at 340.076 kb on - strand, within IAI47_20475 at 340.105 kb on + strand, within IAI47_20475 at 340.147 kb on + strand, within IAI47_20475 at 340.197 kb on + strand, within IAI47_20475 at 340.197 kb on + strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.198 kb on - strand, within IAI47_20475 at 340.213 kb on + strand, within IAI47_20475 at 340.273 kb on + strand, within IAI47_20475 at 340.300 kb on + strand, within IAI47_20475 at 340.300 kb on + strand, within IAI47_20475 at 340.300 kb on + strand, within IAI47_20475 at 340.309 kb on + strand, within IAI47_20475 at 340.310 kb on - strand, within IAI47_20475 at 340.310 kb on - strand, within IAI47_20475 at 340.310 kb on - strand, within IAI47_20475 at 340.331 kb on + strand, within IAI47_20475 at 340.331 kb on + strand, within IAI47_20475 at 340.394 kb on - strand, within IAI47_20475 at 340.394 kb on - strand, within IAI47_20475 at 340.415 kb on - strand, within IAI47_20475 at 340.416 kb on + strand, within IAI47_20475 at 340.416 kb on + strand, within IAI47_20475 at 340.416 kb on + strand, within IAI47_20475 at 340.417 kb on - strand, within IAI47_20475 at 340.443 kb on + strand, within IAI47_20475 at 340.443 kb on + strand, within IAI47_20475 at 340.553 kb on - strand, within IAI47_20475 at 340.555 kb on + strand, within IAI47_20475 at 340.566 kb on + strand, within IAI47_20475 at 340.567 kb on - strand, within IAI47_20475 at 340.600 kb on + strand, within IAI47_20475 at 340.600 kb on + strand, within IAI47_20475 at 340.601 kb on - strand, within IAI47_20475 at 340.601 kb on - strand, within IAI47_20475 at 340.601 kb on - strand, within IAI47_20475 at 340.603 kb on + strand, within IAI47_20475 at 340.603 kb on + strand, within IAI47_20475 at 340.603 kb on + strand, within IAI47_20475 at 340.603 kb on + strand, within IAI47_20475 at 340.603 kb on + strand, within IAI47_20475 at 340.604 kb on - strand, within IAI47_20475 at 340.604 kb on - strand, within IAI47_20475 at 340.604 kb on - strand, within IAI47_20475 at 340.604 kb on - strand, within IAI47_20475 at 340.604 kb on - strand, within IAI47_20475 at 340.604 kb on - strand, within IAI47_20475 at 340.604 kb on - strand, within IAI47_20475 at 340.607 kb on + strand, within IAI47_20475 at 340.608 kb on - strand, within IAI47_20475 at 340.655 kb on - strand, within IAI47_20475 at 340.700 kb on + strand at 340.701 kb on - strand at 340.701 kb on - strand at 340.724 kb on + strand at 340.724 kb on + strand at 340.724 kb on + strand at 340.724 kb on + strand at 340.724 kb on + strand at 340.724 kb on + strand at 340.725 kb on - strand at 340.725 kb on - strand at 340.725 kb on - strand at 340.725 kb on - strand at 340.756 kb on + strand at 340.756 kb on + strand at 340.756 kb on + strand at 340.756 kb on + strand at 340.756 kb on + strand at 340.756 kb on + strand at 340.757 kb on - strand at 340.757 kb on - strand at 340.757 kb on - strand at 340.757 kb on - strand at 340.757 kb on - strand at 340.766 kb on + strand at 340.766 kb on + strand at 340.767 kb on - strand at 340.767 kb on - strand at 340.787 kb on - strand at 340.877 kb on + strand, within IAI47_20480 at 340.878 kb on - strand, within IAI47_20480 at 340.883 kb on + strand, within IAI47_20480 at 340.919 kb on + strand, within IAI47_20480 at 340.946 kb on + strand, within IAI47_20480 at 340.946 kb on + strand, within IAI47_20480 at 340.965 kb on - strand, within IAI47_20480 at 341.036 kb on + strand, within IAI47_20480 at 341.036 kb on + strand, within IAI47_20480 at 341.063 kb on - strand, within IAI47_20480 at 341.072 kb on + strand, within IAI47_20480 at 341.073 kb on - strand, within IAI47_20480 at 341.073 kb on - strand, within IAI47_20480 at 341.073 kb on - strand, within IAI47_20480 at 341.073 kb on - strand, within IAI47_20480 at 341.073 kb on - strand, within IAI47_20480 at 341.139 kb on + strand, within IAI47_20480 at 341.139 kb on + strand, within IAI47_20480 at 341.139 kb on + strand, within IAI47_20480 at 341.139 kb on + strand, within IAI47_20480 at 341.140 kb on - strand, within IAI47_20480 at 341.180 kb on + strand, within IAI47_20480 at 341.180 kb on + strand, within IAI47_20480 at 341.183 kb on + strand, within IAI47_20480 at 341.183 kb on + strand, within IAI47_20480 at 341.183 kb on + strand, within IAI47_20480 at 341.184 kb on - strand, within IAI47_20480 at 341.184 kb on - strand, within IAI47_20480 at 341.201 kb on + strand, within IAI47_20480 at 341.217 kb on + strand, within IAI47_20480 at 341.217 kb on + strand, within IAI47_20480 at 341.218 kb on - strand, within IAI47_20480 at 341.232 kb on + strand, within IAI47_20480 at 341.232 kb on + strand, within IAI47_20480 at 341.290 kb on - strand at 341.326 kb on + strand at 341.326 kb on + strand at 341.326 kb on + strand at 341.326 kb on + strand at 341.326 kb on + strand at 341.327 kb on - strand at 341.331 kb on - strand at 341.331 kb on - strand at 341.331 kb on - strand at 341.331 kb on - strand at 341.331 kb on - strand at 341.334 kb on + strand at 341.335 kb on - strand at 341.335 kb on - strand at 341.335 kb on - strand at 341.339 kb on + strand at 341.339 kb on + strand at 341.340 kb on - strand at 341.340 kb on - strand at 341.340 kb on - strand at 341.340 kb on - strand at 341.340 kb on - strand at 341.353 kb on - strand at 341.355 kb on + strand at 341.355 kb on + strand at 341.356 kb on - strand at 341.356 kb on - strand at 341.356 kb on - strand at 341.356 kb on - strand at 341.356 kb on - strand at 341.356 kb on - strand at 341.358 kb on + strand at 341.358 kb on + strand at 341.358 kb on + strand at 341.358 kb on + strand at 341.359 kb on - strand at 341.396 kb on - strand at 341.396 kb on - strand at 341.437 kb on - strand at 341.438 kb on + strand at 341.438 kb on + strand at 341.438 kb on + strand at 341.438 kb on + strand at 341.439 kb on - strand at 341.439 kb on - strand at 341.439 kb on - strand at 341.443 kb on + strand at 341.443 kb on + strand at 341.444 kb on - strand at 341.445 kb on + strand at 341.446 kb on - strand at 341.457 kb on + strand at 341.461 kb on + strand at 341.461 kb on + strand at 341.462 kb on - strand at 341.462 kb on - strand at 341.462 kb on - strand at 341.471 kb on + strand at 341.472 kb on - strand at 341.472 kb on - strand at 341.492 kb on - strand at 341.502 kb on + strand at 341.502 kb on + strand at 341.543 kb on + strand at 341.543 kb on + strand at 341.544 kb on - strand at 341.571 kb on + strand at 341.571 kb on + strand at 341.572 kb on - strand at 341.580 kb on + strand at 341.584 kb on + strand at 341.595 kb on + strand at 341.596 kb on - strand at 341.596 kb on - strand at 341.596 kb on - strand at 341.596 kb on - strand at 341.596 kb on - strand at 341.596 kb on - strand at 341.608 kb on + strand at 341.608 kb on + strand at 341.608 kb on + strand at 341.609 kb on - strand at 341.616 kb on + strand at 341.616 kb on + strand at 341.639 kb on + strand at 341.639 kb on + strand at 341.639 kb on + strand at 341.639 kb on + strand at 341.639 kb on + strand at 341.640 kb on - strand at 341.640 kb on - strand at 341.640 kb on - strand at 341.652 kb on - strand at 341.689 kb on - strand at 341.695 kb on + strand at 341.695 kb on + strand at 341.763 kb on + strand at 341.764 kb on - strand at 341.820 kb on + strand at 341.821 kb on - strand at 341.868 kb on - strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.890 kb on + strand at 341.891 kb on - strand at 341.891 kb on - strand at 341.891 kb on - strand at 341.891 kb on - strand at 341.967 kb on - strand at 341.969 kb on + strand at 341.970 kb on - strand at 341.975 kb on + strand at 341.975 kb on + strand at 342.035 kb on - strand at 342.043 kb on + strand at 342.044 kb on - strand at 342.044 kb on - strand at 342.044 kb on - strand at 342.044 kb on - strand at 342.089 kb on + strand at 342.089 kb on + strand at 342.089 kb on + strand at 342.089 kb on + strand at 342.089 kb on + strand at 342.089 kb on + strand at 342.090 kb on - strand at 342.093 kb on + strand at 342.093 kb on + strand at 342.093 kb on + strand at 342.093 kb on + strand at 342.094 kb on - strand at 342.094 kb on - strand at 342.161 kb on + strand, within IAI47_20485 at 342.161 kb on + strand, within IAI47_20485 at 342.162 kb on - strand, within IAI47_20485 at 342.176 kb on + strand, within IAI47_20485 at 342.179 kb on + strand, within IAI47_20485 at 342.180 kb on - strand, within IAI47_20485 at 342.230 kb on + strand, within IAI47_20485 at 342.234 kb on + strand, within IAI47_20485 at 342.235 kb on - strand, within IAI47_20485 at 342.235 kb on - strand, within IAI47_20485 at 342.235 kb on - strand, within IAI47_20485 at 342.296 kb on + strand, within IAI47_20485
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 remove 339,793 + IAI47_20475 0.18 -1.5 339,793 + IAI47_20475 0.18 -1.5 339,794 - IAI47_20475 0.18 +0.9 339,794 - IAI47_20475 0.18 -0.3 339,794 - IAI47_20475 0.18 -0.1 339,794 - IAI47_20475 0.18 +0.2 339,848 + IAI47_20475 0.23 +0.7 339,849 - IAI47_20475 0.23 -0.7 339,863 + IAI47_20475 0.24 +0.0 339,875 + IAI47_20475 0.25 -0.5 339,904 + IAI47_20475 0.27 -0.9 339,905 - IAI47_20475 0.27 +1.2 339,910 + IAI47_20475 0.28 -0.4 339,910 + IAI47_20475 0.28 +0.2 339,910 + IAI47_20475 0.28 -0.5 339,911 - IAI47_20475 0.28 -0.1 339,919 + IAI47_20475 0.28 -1.0 339,941 + IAI47_20475 0.30 -0.8 339,941 + IAI47_20475 0.30 +0.1 340,049 - IAI47_20475 0.39 -0.6 340,066 + IAI47_20475 0.41 +0.7 340,067 - IAI47_20475 0.41 +0.3 340,075 + IAI47_20475 0.41 -1.5 340,076 - IAI47_20475 0.41 -1.2 340,076 - IAI47_20475 0.41 -0.2 340,076 - IAI47_20475 0.41 +0.9 340,105 + IAI47_20475 0.44 -0.4 340,147 + IAI47_20475 0.47 -0.4 340,197 + IAI47_20475 0.51 +1.4 340,197 + IAI47_20475 0.51 -0.2 340,198 - IAI47_20475 0.52 +0.6 340,198 - IAI47_20475 0.52 +0.4 340,198 - IAI47_20475 0.52 +0.4 340,198 - IAI47_20475 0.52 +0.5 340,198 - IAI47_20475 0.52 -0.2 340,198 - IAI47_20475 0.52 -0.4 340,198 - IAI47_20475 0.52 -1.4 340,213 + IAI47_20475 0.53 -0.3 340,273 + IAI47_20475 0.58 +1.1 340,300 + IAI47_20475 0.60 +0.3 340,300 + IAI47_20475 0.60 -0.6 340,300 + IAI47_20475 0.60 +0.8 340,309 + IAI47_20475 0.61 -0.5 340,310 - IAI47_20475 0.61 -0.6 340,310 - IAI47_20475 0.61 -0.1 340,310 - IAI47_20475 0.61 +1.1 340,331 + IAI47_20475 0.63 -1.0 340,331 + IAI47_20475 0.63 +0.9 340,394 - IAI47_20475 0.68 +1.6 340,394 - IAI47_20475 0.68 -0.0 340,415 - IAI47_20475 0.69 -0.9 340,416 + IAI47_20475 0.70 -0.1 340,416 + IAI47_20475 0.70 -1.1 340,416 + IAI47_20475 0.70 -0.3 340,417 - IAI47_20475 0.70 +0.6 340,443 + IAI47_20475 0.72 +0.3 340,443 + IAI47_20475 0.72 -0.8 340,553 - IAI47_20475 0.81 -0.2 340,555 + IAI47_20475 0.81 -0.0 340,566 + IAI47_20475 0.82 +0.2 340,567 - IAI47_20475 0.82 -0.5 340,600 + IAI47_20475 0.85 +0.3 340,600 + IAI47_20475 0.85 -0.9 340,601 - IAI47_20475 0.85 +0.1 340,601 - IAI47_20475 0.85 +0.7 340,601 - IAI47_20475 0.85 +0.1 340,603 + IAI47_20475 0.85 +0.6 340,603 + IAI47_20475 0.85 +0.3 340,603 + IAI47_20475 0.85 +0.5 340,603 + IAI47_20475 0.85 +0.7 340,603 + IAI47_20475 0.85 -1.2 340,604 - IAI47_20475 0.85 +0.7 340,604 - IAI47_20475 0.85 +0.8 340,604 - IAI47_20475 0.85 +0.1 340,604 - IAI47_20475 0.85 -0.4 340,604 - IAI47_20475 0.85 +0.7 340,604 - IAI47_20475 0.85 -0.3 340,604 - IAI47_20475 0.85 -0.7 340,607 + IAI47_20475 0.85 -0.4 340,608 - IAI47_20475 0.85 -0.8 340,655 - IAI47_20475 0.89 -0.3 340,700 + +0.7 340,701 - -0.2 340,701 - +0.4 340,724 + -0.8 340,724 + +0.6 340,724 + +0.6 340,724 + -0.1 340,724 + -0.5 340,724 + -1.3 340,725 - +1.0 340,725 - -0.1 340,725 - -1.4 340,725 - +0.5 340,756 + -1.5 340,756 + -1.1 340,756 + -1.2 340,756 + +0.8 340,756 + -0.7 340,756 + +1.4 340,757 - -1.0 340,757 - +0.6 340,757 - +1.0 340,757 - -1.0 340,757 - +0.9 340,766 + +0.0 340,766 + +0.4 340,767 - -0.1 340,767 - +0.5 340,787 - -0.0 340,877 + IAI47_20480 0.17 -1.3 340,878 - IAI47_20480 0.17 -0.9 340,883 + IAI47_20480 0.18 -0.2 340,919 + IAI47_20480 0.24 -1.0 340,946 + IAI47_20480 0.29 -0.9 340,946 + IAI47_20480 0.29 -0.0 340,965 - IAI47_20480 0.32 -1.5 341,036 + IAI47_20480 0.45 +0.5 341,036 + IAI47_20480 0.45 -0.1 341,063 - IAI47_20480 0.50 -1.5 341,072 + IAI47_20480 0.52 +1.6 341,073 - IAI47_20480 0.52 -0.4 341,073 - IAI47_20480 0.52 -1.6 341,073 - IAI47_20480 0.52 -0.9 341,073 - IAI47_20480 0.52 -3.1 341,073 - IAI47_20480 0.52 +0.2 341,139 + IAI47_20480 0.64 +0.6 341,139 + IAI47_20480 0.64 -2.4 341,139 + IAI47_20480 0.64 -0.7 341,139 + IAI47_20480 0.64 -1.7 341,140 - IAI47_20480 0.64 -0.8 341,180 + IAI47_20480 0.71 -0.5 341,180 + IAI47_20480 0.71 +0.4 341,183 + IAI47_20480 0.72 +0.3 341,183 + IAI47_20480 0.72 -1.8 341,183 + IAI47_20480 0.72 +0.4 341,184 - IAI47_20480 0.72 +0.3 341,184 - IAI47_20480 0.72 -0.9 341,201 + IAI47_20480 0.75 -0.4 341,217 + IAI47_20480 0.78 -0.0 341,217 + IAI47_20480 0.78 +0.3 341,218 - IAI47_20480 0.78 +0.8 341,232 + IAI47_20480 0.81 +0.6 341,232 + IAI47_20480 0.81 -0.6 341,290 - +0.7 341,326 + -1.1 341,326 + +1.3 341,326 + +0.5 341,326 + -0.1 341,326 + -1.8 341,327 - -3.1 341,331 - -1.4 341,331 - +2.0 341,331 - +1.4 341,331 - -2.1 341,331 - +0.2 341,334 + -1.5 341,335 - -0.0 341,335 - -1.1 341,335 - +1.2 341,339 + -0.0 341,339 + +0.7 341,340 - +1.0 341,340 - +0.1 341,340 - +0.6 341,340 - +1.1 341,340 - -1.5 341,353 - +0.8 341,355 + -0.4 341,355 + +0.1 341,356 - +1.4 341,356 - +1.4 341,356 - -1.1 341,356 - -2.4 341,356 - -2.2 341,356 - -0.4 341,358 + -3.2 341,358 + +0.9 341,358 + +2.0 341,358 + +0.8 341,359 - +0.7 341,396 - +1.2 341,396 - -0.0 341,437 - +0.2 341,438 + +0.1 341,438 + +1.0 341,438 + -1.2 341,438 + -0.0 341,439 - +0.2 341,439 - +2.1 341,439 - -0.0 341,443 + -1.2 341,443 + +0.1 341,444 - +1.3 341,445 + +2.2 341,446 - -0.0 341,457 + -1.2 341,461 + -1.2 341,461 + -0.7 341,462 - -1.0 341,462 - +0.8 341,462 - -0.6 341,471 + +0.3 341,472 - +0.4 341,472 - +0.4 341,492 - +0.7 341,502 + +1.1 341,502 + +1.3 341,543 + +1.6 341,543 + +0.4 341,544 - +0.7 341,571 + -0.6 341,571 + +0.5 341,572 - -1.1 341,580 + +1.4 341,584 + +0.4 341,595 + +1.2 341,596 - -0.2 341,596 - -0.1 341,596 - +0.3 341,596 - -0.7 341,596 - -0.7 341,596 - +0.7 341,608 + -0.5 341,608 + +1.2 341,608 + +0.1 341,609 - -1.1 341,616 + +0.4 341,616 + +1.2 341,639 + -2.4 341,639 + +0.1 341,639 + -1.5 341,639 + -0.7 341,639 + +0.1 341,640 - -1.7 341,640 - -0.1 341,640 - -0.3 341,652 - +0.1 341,689 - -0.1 341,695 + +0.3 341,695 + -0.9 341,763 + -0.0 341,764 - -0.8 341,820 + -0.4 341,821 - +0.4 341,868 - +0.1 341,890 + +1.2 341,890 + -0.7 341,890 + +0.2 341,890 + +0.5 341,890 + -0.6 341,890 + +0.4 341,890 + +1.5 341,890 + +1.6 341,890 + -0.5 341,890 + +0.2 341,891 - -0.0 341,891 - -1.6 341,891 - +0.0 341,891 - -2.2 341,967 - -0.1 341,969 + -0.6 341,970 - +0.5 341,975 + +0.7 341,975 + +0.6 342,035 - +0.8 342,043 + +0.3 342,044 - +0.4 342,044 - -1.0 342,044 - -0.4 342,044 - -0.3 342,089 + +0.5 342,089 + +0.4 342,089 + -1.1 342,089 + +0.6 342,089 + +0.3 342,089 + -0.1 342,090 - -0.0 342,093 + -0.7 342,093 + -0.5 342,093 + -0.1 342,093 + +0.3 342,094 - -0.4 342,094 - +1.0 342,161 + IAI47_20485 0.10 -0.0 342,161 + IAI47_20485 0.10 -1.0 342,162 - IAI47_20485 0.10 +0.2 342,176 + IAI47_20485 0.11 +0.4 342,179 + IAI47_20485 0.11 +1.3 342,180 - IAI47_20485 0.11 +0.9 342,230 + IAI47_20485 0.13 +0.9 342,234 + IAI47_20485 0.13 -0.6 342,235 - IAI47_20485 0.13 +0.1 342,235 - IAI47_20485 0.13 -0.6 342,235 - IAI47_20485 0.13 +0.3 342,296 + IAI47_20485 0.15 -0.4
Or see this region's nucleotide sequence