Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g40 and HP15_p187g41 are separated by 259 nucleotides HP15_p187g41 and HP15_p187g42 are separated by 26 nucleotides HP15_p187g42 and HP15_p187g43 are separated by 137 nucleotides
HP15_p187g40: HP15_p187g40 - GGDEF family protein, at 33,808 to 34,683
_p187g40
HP15_p187g41: HP15_p187g41 - hypothetical protein, at 34,943 to 35,161
_p187g41
HP15_p187g42: HP15_p187g42 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing-like protein, at 35,188 to 35,697
_p187g42
HP15_p187g43: HP15_p187g43 - conserved hypothetical protein, at 35,835 to 37,220
_p187g43
Position (kb) 34
35
36 Strain fitness (log2 ratio) -1
0
1 at 33.956 kb on + strand, within HP15_p187g40 at 33.964 kb on - strand, within HP15_p187g40 at 33.964 kb on - strand, within HP15_p187g40 at 33.964 kb on - strand, within HP15_p187g40 at 33.966 kb on + strand, within HP15_p187g40 at 33.966 kb on + strand, within HP15_p187g40 at 33.969 kb on - strand, within HP15_p187g40 at 33.974 kb on - strand, within HP15_p187g40 at 33.998 kb on + strand, within HP15_p187g40 at 34.005 kb on + strand, within HP15_p187g40 at 34.013 kb on + strand, within HP15_p187g40 at 34.020 kb on + strand, within HP15_p187g40 at 34.030 kb on + strand, within HP15_p187g40 at 34.067 kb on + strand, within HP15_p187g40 at 34.067 kb on + strand, within HP15_p187g40 at 34.075 kb on + strand, within HP15_p187g40 at 34.075 kb on - strand, within HP15_p187g40 at 34.083 kb on + strand, within HP15_p187g40 at 34.083 kb on - strand, within HP15_p187g40 at 34.086 kb on - strand, within HP15_p187g40 at 34.097 kb on + strand, within HP15_p187g40 at 34.097 kb on + strand, within HP15_p187g40 at 34.097 kb on + strand, within HP15_p187g40 at 34.112 kb on + strand, within HP15_p187g40 at 34.127 kb on + strand, within HP15_p187g40 at 34.131 kb on - strand, within HP15_p187g40 at 34.135 kb on - strand, within HP15_p187g40 at 34.141 kb on + strand, within HP15_p187g40 at 34.147 kb on - strand, within HP15_p187g40 at 34.149 kb on - strand, within HP15_p187g40 at 34.149 kb on - strand, within HP15_p187g40 at 34.174 kb on + strand, within HP15_p187g40 at 34.188 kb on + strand, within HP15_p187g40 at 34.241 kb on + strand, within HP15_p187g40 at 34.272 kb on + strand, within HP15_p187g40 at 34.273 kb on + strand, within HP15_p187g40 at 34.321 kb on + strand, within HP15_p187g40 at 34.321 kb on + strand, within HP15_p187g40 at 34.329 kb on - strand, within HP15_p187g40 at 34.382 kb on - strand, within HP15_p187g40 at 34.421 kb on + strand, within HP15_p187g40 at 34.441 kb on + strand, within HP15_p187g40 at 34.449 kb on - strand, within HP15_p187g40 at 34.449 kb on - strand, within HP15_p187g40 at 34.451 kb on + strand, within HP15_p187g40 at 34.485 kb on - strand, within HP15_p187g40 at 34.512 kb on + strand, within HP15_p187g40 at 34.519 kb on + strand, within HP15_p187g40 at 34.522 kb on + strand, within HP15_p187g40 at 34.525 kb on - strand, within HP15_p187g40 at 34.581 kb on - strand, within HP15_p187g40 at 34.581 kb on - strand, within HP15_p187g40 at 34.585 kb on + strand, within HP15_p187g40 at 34.609 kb on + strand at 34.609 kb on + strand at 34.609 kb on + strand at 34.609 kb on + strand at 34.612 kb on - strand at 34.617 kb on - strand at 34.617 kb on - strand at 34.625 kb on + strand at 34.625 kb on + strand at 34.681 kb on - strand at 34.767 kb on + strand at 34.771 kb on + strand at 34.772 kb on + strand at 34.780 kb on - strand at 34.780 kb on - strand at 34.874 kb on + strand at 34.876 kb on + strand at 34.935 kb on + strand at 34.935 kb on + strand at 34.935 kb on + strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.962 kb on - strand at 34.995 kb on - strand, within HP15_p187g41 at 35.000 kb on + strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.032 kb on + strand, within HP15_p187g41 at 35.032 kb on + strand, within HP15_p187g41 at 35.042 kb on - strand, within HP15_p187g41 at 35.064 kb on + strand, within HP15_p187g41 at 35.067 kb on + strand, within HP15_p187g41 at 35.067 kb on + strand, within HP15_p187g41 at 35.070 kb on - strand, within HP15_p187g41 at 35.077 kb on - strand, within HP15_p187g41 at 35.216 kb on + strand at 35.273 kb on + strand, within HP15_p187g42 at 35.273 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.308 kb on + strand, within HP15_p187g42 at 35.342 kb on - strand, within HP15_p187g42 at 35.344 kb on + strand, within HP15_p187g42 at 35.344 kb on + strand, within HP15_p187g42 at 35.362 kb on - strand, within HP15_p187g42 at 35.362 kb on - strand, within HP15_p187g42 at 35.399 kb on + strand, within HP15_p187g42 at 35.422 kb on - strand, within HP15_p187g42 at 35.450 kb on - strand, within HP15_p187g42 at 35.455 kb on - strand, within HP15_p187g42 at 35.488 kb on + strand, within HP15_p187g42 at 35.496 kb on - strand, within HP15_p187g42 at 35.498 kb on + strand, within HP15_p187g42 at 35.500 kb on + strand, within HP15_p187g42 at 35.506 kb on - strand, within HP15_p187g42 at 35.549 kb on + strand, within HP15_p187g42 at 35.562 kb on + strand, within HP15_p187g42 at 35.574 kb on + strand, within HP15_p187g42 at 35.606 kb on + strand, within HP15_p187g42 at 35.644 kb on + strand, within HP15_p187g42 at 35.651 kb on + strand at 35.658 kb on - strand at 35.659 kb on - strand at 35.690 kb on + strand at 35.699 kb on + strand at 35.711 kb on + strand at 35.742 kb on + strand at 35.750 kb on - strand at 35.760 kb on - strand at 35.790 kb on + strand at 35.795 kb on + strand at 35.858 kb on + strand at 35.859 kb on - strand at 35.860 kb on - strand at 35.866 kb on - strand at 35.866 kb on - strand at 35.871 kb on - strand at 35.872 kb on - strand at 35.885 kb on + strand at 35.893 kb on - strand at 35.900 kb on - strand at 35.900 kb on - strand at 35.931 kb on - strand at 35.954 kb on + strand at 36.057 kb on - strand, within HP15_p187g43 at 36.063 kb on + strand, within HP15_p187g43 at 36.117 kb on + strand, within HP15_p187g43 at 36.133 kb on + strand, within HP15_p187g43 at 36.147 kb on + strand, within HP15_p187g43
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 33,956 + HP15_p187g40 0.17 -0.3 33,964 - HP15_p187g40 0.18 -0.7 33,964 - HP15_p187g40 0.18 +0.1 33,964 - HP15_p187g40 0.18 +0.4 33,966 + HP15_p187g40 0.18 -0.7 33,966 + HP15_p187g40 0.18 -0.1 33,969 - HP15_p187g40 0.18 +0.4 33,974 - HP15_p187g40 0.19 -0.7 33,998 + HP15_p187g40 0.22 +0.3 34,005 + HP15_p187g40 0.22 -0.6 34,013 + HP15_p187g40 0.23 +0.6 34,020 + HP15_p187g40 0.24 +0.7 34,030 + HP15_p187g40 0.25 +0.2 34,067 + HP15_p187g40 0.30 -0.4 34,067 + HP15_p187g40 0.30 -0.5 34,075 + HP15_p187g40 0.30 +0.6 34,075 - HP15_p187g40 0.30 +0.0 34,083 + HP15_p187g40 0.31 -0.1 34,083 - HP15_p187g40 0.31 -0.9 34,086 - HP15_p187g40 0.32 -0.7 34,097 + HP15_p187g40 0.33 +0.2 34,097 + HP15_p187g40 0.33 -0.1 34,097 + HP15_p187g40 0.33 -0.6 34,112 + HP15_p187g40 0.35 -0.4 34,127 + HP15_p187g40 0.36 +0.3 34,131 - HP15_p187g40 0.37 +0.4 34,135 - HP15_p187g40 0.37 -0.5 34,141 + HP15_p187g40 0.38 +0.7 34,147 - HP15_p187g40 0.39 +0.7 34,149 - HP15_p187g40 0.39 +0.1 34,149 - HP15_p187g40 0.39 +0.2 34,174 + HP15_p187g40 0.42 -0.1 34,188 + HP15_p187g40 0.43 +0.1 34,241 + HP15_p187g40 0.49 -0.0 34,272 + HP15_p187g40 0.53 -1.2 34,273 + HP15_p187g40 0.53 +0.8 34,321 + HP15_p187g40 0.59 -0.7 34,321 + HP15_p187g40 0.59 +0.3 34,329 - HP15_p187g40 0.59 +0.1 34,382 - HP15_p187g40 0.66 +0.1 34,421 + HP15_p187g40 0.70 +1.3 34,441 + HP15_p187g40 0.72 +0.8 34,449 - HP15_p187g40 0.73 +0.2 34,449 - HP15_p187g40 0.73 +0.0 34,451 + HP15_p187g40 0.73 +0.0 34,485 - HP15_p187g40 0.77 -0.8 34,512 + HP15_p187g40 0.80 -1.1 34,519 + HP15_p187g40 0.81 -0.4 34,522 + HP15_p187g40 0.82 +1.2 34,525 - HP15_p187g40 0.82 +0.4 34,581 - HP15_p187g40 0.88 -0.2 34,581 - HP15_p187g40 0.88 +0.3 34,585 + HP15_p187g40 0.89 +0.6 34,609 + +0.7 34,609 + +0.4 34,609 + -0.2 34,609 + -0.0 34,612 - +0.2 34,617 - +0.2 34,617 - -0.2 34,625 + -0.4 34,625 + -0.1 34,681 - +0.8 34,767 + +0.3 34,771 + +0.1 34,772 + -0.1 34,780 - +1.2 34,780 - +0.1 34,874 + +0.5 34,876 + -0.6 34,935 + -0.2 34,935 + -0.0 34,935 + -0.4 34,943 - -0.3 34,943 - +0.0 34,943 - +0.6 34,943 - +0.1 34,962 - +1.3 34,995 - HP15_p187g41 0.24 +0.2 35,000 + HP15_p187g41 0.26 +0.4 35,008 - HP15_p187g41 0.30 +0.2 35,008 - HP15_p187g41 0.30 -0.4 35,008 - HP15_p187g41 0.30 -0.1 35,032 + HP15_p187g41 0.41 +0.2 35,032 + HP15_p187g41 0.41 -0.4 35,042 - HP15_p187g41 0.45 -1.2 35,064 + HP15_p187g41 0.55 -1.2 35,067 + HP15_p187g41 0.57 +0.5 35,067 + HP15_p187g41 0.57 -0.0 35,070 - HP15_p187g41 0.58 +0.0 35,077 - HP15_p187g41 0.61 +0.4 35,216 + +0.1 35,273 + HP15_p187g42 0.17 +1.6 35,273 - HP15_p187g42 0.17 +0.1 35,281 - HP15_p187g42 0.18 +0.0 35,281 - HP15_p187g42 0.18 -0.0 35,281 - HP15_p187g42 0.18 -0.1 35,308 + HP15_p187g42 0.24 -1.0 35,342 - HP15_p187g42 0.30 +0.4 35,344 + HP15_p187g42 0.31 -0.3 35,344 + HP15_p187g42 0.31 +0.1 35,362 - HP15_p187g42 0.34 -0.3 35,362 - HP15_p187g42 0.34 +0.2 35,399 + HP15_p187g42 0.41 +0.9 35,422 - HP15_p187g42 0.46 +1.1 35,450 - HP15_p187g42 0.51 -0.4 35,455 - HP15_p187g42 0.52 +0.0 35,488 + HP15_p187g42 0.59 -1.0 35,496 - HP15_p187g42 0.60 +0.1 35,498 + HP15_p187g42 0.61 +0.7 35,500 + HP15_p187g42 0.61 -0.0 35,506 - HP15_p187g42 0.62 +1.3 35,549 + HP15_p187g42 0.71 +0.1 35,562 + HP15_p187g42 0.73 +0.2 35,574 + HP15_p187g42 0.76 +0.7 35,606 + HP15_p187g42 0.82 -0.2 35,644 + HP15_p187g42 0.89 +0.7 35,651 + -0.3 35,658 - +0.9 35,659 - +0.4 35,690 + +0.6 35,699 + +0.2 35,711 + +0.5 35,742 + +0.2 35,750 - -0.9 35,760 - -1.0 35,790 + -0.2 35,795 + +0.3 35,858 + +0.1 35,859 - +0.4 35,860 - +0.1 35,866 - -0.5 35,866 - -0.0 35,871 - -0.4 35,872 - +0.9 35,885 + +0.1 35,893 - -1.4 35,900 - -0.0 35,900 - -0.7 35,931 - +0.4 35,954 + +0.9 36,057 - HP15_p187g43 0.16 -0.6 36,063 + HP15_p187g43 0.16 +0.1 36,117 + HP15_p187g43 0.20 +0.5 36,133 + HP15_p187g43 0.22 +1.6 36,147 + HP15_p187g43 0.23 -0.5
Or see this region's nucleotide sequence