Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4107 and HP15_4108 overlap by 4 nucleotides HP15_4108 and HP15_4109 are separated by 6 nucleotides HP15_4109 and HP15_4110 overlap by 1 nucleotides
HP15_4107: HP15_4107 - endonuclease 8, at 4,339,785 to 4,340,600
_4107
HP15_4108: HP15_4108 - translation factor, SUA5 type, at 4,340,597 to 4,341,586
_4108
HP15_4109: HP15_4109 - conserved hypothetical protein, at 4,341,593 to 4,342,414
_4109
HP15_4110: HP15_4110 - conserved hypothetical protein, at 4,342,414 to 4,344,696
_4110
Position (kb)
4341
4342
4343 Strain fitness (log2 ratio)
-1
0
1
2 at 4340.613 kb on + strand at 4340.613 kb on + strand at 4340.613 kb on + strand at 4340.613 kb on + strand at 4340.613 kb on + strand at 4340.621 kb on - strand at 4340.621 kb on - strand at 4340.621 kb on - strand at 4340.661 kb on - strand at 4340.721 kb on + strand, within HP15_4108 at 4340.729 kb on - strand, within HP15_4108 at 4340.887 kb on - strand, within HP15_4108 at 4340.918 kb on + strand, within HP15_4108 at 4340.926 kb on - strand, within HP15_4108 at 4340.926 kb on - strand, within HP15_4108 at 4341.006 kb on - strand, within HP15_4108 at 4341.032 kb on - strand, within HP15_4108 at 4341.066 kb on - strand, within HP15_4108 at 4341.077 kb on + strand, within HP15_4108 at 4341.077 kb on + strand, within HP15_4108 at 4341.129 kb on - strand, within HP15_4108 at 4341.376 kb on - strand, within HP15_4108 at 4341.556 kb on + strand at 4341.589 kb on + strand at 4341.606 kb on - strand at 4341.671 kb on - strand at 4341.731 kb on - strand, within HP15_4109 at 4341.884 kb on - strand, within HP15_4109 at 4341.900 kb on + strand, within HP15_4109 at 4341.912 kb on + strand, within HP15_4109 at 4341.912 kb on + strand, within HP15_4109 at 4341.912 kb on + strand, within HP15_4109 at 4341.912 kb on + strand, within HP15_4109 at 4341.912 kb on + strand, within HP15_4109 at 4341.912 kb on + strand, within HP15_4109 at 4341.920 kb on - strand, within HP15_4109 at 4341.920 kb on - strand, within HP15_4109 at 4341.920 kb on - strand, within HP15_4109 at 4341.920 kb on - strand, within HP15_4109 at 4341.920 kb on - strand, within HP15_4109 at 4341.952 kb on - strand, within HP15_4109 at 4341.998 kb on + strand, within HP15_4109 at 4342.011 kb on - strand, within HP15_4109 at 4342.019 kb on - strand, within HP15_4109 at 4342.047 kb on - strand, within HP15_4109 at 4342.070 kb on + strand, within HP15_4109 at 4342.099 kb on + strand, within HP15_4109 at 4342.099 kb on + strand, within HP15_4109 at 4342.107 kb on - strand, within HP15_4109 at 4342.146 kb on + strand, within HP15_4109 at 4342.151 kb on + strand, within HP15_4109 at 4342.151 kb on + strand, within HP15_4109 at 4342.151 kb on + strand, within HP15_4109 at 4342.324 kb on - strand, within HP15_4109 at 4342.324 kb on - strand, within HP15_4109 at 4342.344 kb on - strand at 4342.348 kb on + strand at 4342.503 kb on + strand at 4342.637 kb on + strand at 4342.637 kb on + strand at 4342.735 kb on + strand, within HP15_4110 at 4342.735 kb on + strand, within HP15_4110 at 4342.743 kb on - strand, within HP15_4110 at 4342.743 kb on - strand, within HP15_4110 at 4342.818 kb on + strand, within HP15_4110 at 4342.826 kb on - strand, within HP15_4110 at 4342.847 kb on - strand, within HP15_4110 at 4342.855 kb on + strand, within HP15_4110 at 4342.863 kb on - strand, within HP15_4110 at 4342.989 kb on + strand, within HP15_4110 at 4343.039 kb on - strand, within HP15_4110 at 4343.104 kb on - strand, within HP15_4110 at 4343.144 kb on - strand, within HP15_4110 at 4343.147 kb on + strand, within HP15_4110 at 4343.147 kb on + strand, within HP15_4110 at 4343.152 kb on + strand, within HP15_4110 at 4343.155 kb on - strand, within HP15_4110 at 4343.199 kb on + strand, within HP15_4110 at 4343.293 kb on + strand, within HP15_4110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 4,340,613 + +0.4 4,340,613 + -0.0 4,340,613 + -0.1 4,340,613 + +0.6 4,340,613 + -0.1 4,340,621 - +0.4 4,340,621 - -0.2 4,340,621 - +0.6 4,340,661 - +0.0 4,340,721 + HP15_4108 0.13 +0.2 4,340,729 - HP15_4108 0.13 +0.4 4,340,887 - HP15_4108 0.29 +0.0 4,340,918 + HP15_4108 0.32 +0.5 4,340,926 - HP15_4108 0.33 -0.4 4,340,926 - HP15_4108 0.33 +1.4 4,341,006 - HP15_4108 0.41 -0.2 4,341,032 - HP15_4108 0.44 +0.2 4,341,066 - HP15_4108 0.47 +0.5 4,341,077 + HP15_4108 0.48 +1.5 4,341,077 + HP15_4108 0.48 +1.6 4,341,129 - HP15_4108 0.54 +0.4 4,341,376 - HP15_4108 0.79 -0.1 4,341,556 + -0.6 4,341,589 + -0.4 4,341,606 - -0.4 4,341,671 - +0.4 4,341,731 - HP15_4109 0.17 +0.3 4,341,884 - HP15_4109 0.35 +0.4 4,341,900 + HP15_4109 0.37 +0.3 4,341,912 + HP15_4109 0.39 -0.4 4,341,912 + HP15_4109 0.39 -1.0 4,341,912 + HP15_4109 0.39 +0.0 4,341,912 + HP15_4109 0.39 +0.0 4,341,912 + HP15_4109 0.39 -0.8 4,341,912 + HP15_4109 0.39 -0.1 4,341,920 - HP15_4109 0.40 -0.2 4,341,920 - HP15_4109 0.40 -0.1 4,341,920 - HP15_4109 0.40 +0.2 4,341,920 - HP15_4109 0.40 +0.5 4,341,920 - HP15_4109 0.40 -0.2 4,341,952 - HP15_4109 0.44 -0.3 4,341,998 + HP15_4109 0.49 +0.3 4,342,011 - HP15_4109 0.51 +0.4 4,342,019 - HP15_4109 0.52 +0.1 4,342,047 - HP15_4109 0.55 +1.8 4,342,070 + HP15_4109 0.58 -0.6 4,342,099 + HP15_4109 0.62 +0.1 4,342,099 + HP15_4109 0.62 -0.5 4,342,107 - HP15_4109 0.63 +0.5 4,342,146 + HP15_4109 0.67 -0.7 4,342,151 + HP15_4109 0.68 -0.8 4,342,151 + HP15_4109 0.68 -0.9 4,342,151 + HP15_4109 0.68 -0.0 4,342,324 - HP15_4109 0.89 +0.2 4,342,324 - HP15_4109 0.89 +0.3 4,342,344 - +0.1 4,342,348 + +0.3 4,342,503 + -1.0 4,342,637 + -1.3 4,342,637 + +1.0 4,342,735 + HP15_4110 0.14 -0.3 4,342,735 + HP15_4110 0.14 -0.4 4,342,743 - HP15_4110 0.14 +0.5 4,342,743 - HP15_4110 0.14 +0.4 4,342,818 + HP15_4110 0.18 +1.5 4,342,826 - HP15_4110 0.18 -0.5 4,342,847 - HP15_4110 0.19 -0.1 4,342,855 + HP15_4110 0.19 -0.3 4,342,863 - HP15_4110 0.20 +1.1 4,342,989 + HP15_4110 0.25 +0.1 4,343,039 - HP15_4110 0.27 -0.4 4,343,104 - HP15_4110 0.30 +0.2 4,343,144 - HP15_4110 0.32 +0.1 4,343,147 + HP15_4110 0.32 +0.2 4,343,147 + HP15_4110 0.32 +0.0 4,343,152 + HP15_4110 0.32 -0.0 4,343,155 - HP15_4110 0.32 -0.3 4,343,199 + HP15_4110 0.34 -0.4 4,343,293 + HP15_4110 0.39 +0.3
Or see this region's nucleotide sequence