Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4037 and HP15_4038 are separated by 9 nucleotides HP15_4038 and HP15_4039 are separated by 147 nucleotides HP15_4039 and HP15_4040 are separated by 46 nucleotides HP15_4040 and HP15_4041 overlap by 4 nucleotides
HP15_4037: HP15_4037 - hydratase/decarboxylase, at 4,273,522 to 4,274,316
_4037
HP15_4038: HP15_4038 - 4-oxalocrotonate tautomerase, at 4,274,326 to 4,274,517
_4038
HP15_4039: HP15_4039 - conserved hypothetical protein, at 4,274,665 to 4,275,264
_4039
HP15_4040: HP15_4040 - ketopantoate reductase ApbA/PanE, at 4,275,311 to 4,276,234
_4040
HP15_4041: HP15_4041 - OmpA/MotB domain protein, at 4,276,231 to 4,277,256
_4041
Position (kb) 4274
4275
4276 Strain fitness (log2 ratio) -1
0
1 at 4273.731 kb on + strand, within HP15_4037 at 4273.807 kb on + strand, within HP15_4037 at 4273.812 kb on + strand, within HP15_4037 at 4273.817 kb on + strand, within HP15_4037 at 4273.825 kb on - strand, within HP15_4037 at 4273.860 kb on - strand, within HP15_4037 at 4273.930 kb on + strand, within HP15_4037 at 4274.072 kb on + strand, within HP15_4037 at 4274.078 kb on + strand, within HP15_4037 at 4274.080 kb on - strand, within HP15_4037 at 4274.292 kb on - strand at 4274.292 kb on - strand at 4274.503 kb on + strand at 4274.505 kb on + strand at 4274.637 kb on - strand at 4274.701 kb on - strand at 4274.806 kb on - strand, within HP15_4039 at 4274.817 kb on - strand, within HP15_4039 at 4274.930 kb on + strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.938 kb on - strand, within HP15_4039 at 4274.954 kb on + strand, within HP15_4039 at 4275.075 kb on + strand, within HP15_4039 at 4275.118 kb on + strand, within HP15_4039 at 4275.131 kb on - strand, within HP15_4039 at 4275.140 kb on + strand, within HP15_4039 at 4275.140 kb on + strand, within HP15_4039 at 4275.148 kb on - strand, within HP15_4039 at 4275.148 kb on - strand, within HP15_4039 at 4275.210 kb on - strand at 4275.217 kb on - strand at 4275.390 kb on - strand at 4275.404 kb on + strand, within HP15_4040 at 4275.413 kb on - strand, within HP15_4040 at 4275.639 kb on + strand, within HP15_4040 at 4275.668 kb on + strand, within HP15_4040 at 4275.668 kb on + strand, within HP15_4040 at 4275.671 kb on - strand, within HP15_4040 at 4275.707 kb on - strand, within HP15_4040 at 4275.717 kb on + strand, within HP15_4040 at 4275.827 kb on - strand, within HP15_4040 at 4276.012 kb on + strand, within HP15_4040 at 4276.130 kb on - strand, within HP15_4040 at 4276.151 kb on + strand at 4276.192 kb on + strand at 4276.194 kb on + strand at 4276.195 kb on - strand at 4276.198 kb on + strand at 4276.200 kb on - strand at 4276.211 kb on + strand at 4276.211 kb on + strand at 4276.211 kb on + strand at 4276.219 kb on - strand at 4276.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 4,273,731 + HP15_4037 0.26 -0.3 4,273,807 + HP15_4037 0.36 -0.4 4,273,812 + HP15_4037 0.36 +0.2 4,273,817 + HP15_4037 0.37 -0.0 4,273,825 - HP15_4037 0.38 +0.3 4,273,860 - HP15_4037 0.43 -0.1 4,273,930 + HP15_4037 0.51 +0.5 4,274,072 + HP15_4037 0.69 -0.2 4,274,078 + HP15_4037 0.70 +0.3 4,274,080 - HP15_4037 0.70 -0.3 4,274,292 - -0.9 4,274,292 - +0.2 4,274,503 + +0.0 4,274,505 + +0.2 4,274,637 - +0.3 4,274,701 - +0.4 4,274,806 - HP15_4039 0.23 +0.5 4,274,817 - HP15_4039 0.25 +1.1 4,274,930 + HP15_4039 0.44 +0.7 4,274,938 - HP15_4039 0.46 +0.3 4,274,938 - HP15_4039 0.46 -0.0 4,274,938 - HP15_4039 0.46 +0.1 4,274,954 + HP15_4039 0.48 -0.1 4,275,075 + HP15_4039 0.68 -0.1 4,275,118 + HP15_4039 0.76 +0.4 4,275,131 - HP15_4039 0.78 +0.1 4,275,140 + HP15_4039 0.79 +0.5 4,275,140 + HP15_4039 0.79 +0.4 4,275,148 - HP15_4039 0.81 +0.5 4,275,148 - HP15_4039 0.81 -0.2 4,275,210 - +0.4 4,275,217 - +0.7 4,275,390 - -0.4 4,275,404 + HP15_4040 0.10 +0.2 4,275,413 - HP15_4040 0.11 +0.6 4,275,639 + HP15_4040 0.35 +0.0 4,275,668 + HP15_4040 0.39 -0.2 4,275,668 + HP15_4040 0.39 +0.4 4,275,671 - HP15_4040 0.39 -0.7 4,275,707 - HP15_4040 0.43 +0.1 4,275,717 + HP15_4040 0.44 +0.2 4,275,827 - HP15_4040 0.56 -0.8 4,276,012 + HP15_4040 0.76 +0.2 4,276,130 - HP15_4040 0.89 +0.5 4,276,151 + +0.2 4,276,192 + +0.2 4,276,194 + -0.4 4,276,195 - +0.6 4,276,198 + +0.5 4,276,200 - -0.5 4,276,211 + -0.0 4,276,211 + +0.3 4,276,211 + -0.4 4,276,219 - -0.5 4,276,251 + +0.4
Or see this region's nucleotide sequence