Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00340 and PGA1_65p00350 are separated by 934 nucleotides PGA1_65p00350 and PGA1_65p00360 are separated by 148 nucleotides
PGA1_65p00340: PGA1_65p00340 - Sulfotransferase family., at 44,811 to 46,031
_65p00340
PGA1_65p00350: PGA1_65p00350 - hemolysin-like protein, at 46,966 to 48,567
_65p00350
PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433
_65p00360
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 46.055 kb on - strand at 46.075 kb on - strand at 46.075 kb on - strand at 46.085 kb on - strand at 46.163 kb on - strand at 46.229 kb on + strand at 46.229 kb on + strand at 46.229 kb on + strand at 46.237 kb on - strand at 46.237 kb on - strand at 46.264 kb on + strand at 46.264 kb on + strand at 46.264 kb on + strand at 46.272 kb on - strand at 46.276 kb on + strand at 46.284 kb on - strand at 46.322 kb on + strand at 46.336 kb on + strand at 46.355 kb on - strand at 46.366 kb on + strand at 46.530 kb on - strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.545 kb on - strand at 46.545 kb on - strand at 46.561 kb on + strand at 46.566 kb on + strand at 46.569 kb on - strand at 46.571 kb on + strand at 46.579 kb on - strand at 46.665 kb on + strand at 46.665 kb on + strand at 46.684 kb on - strand at 46.750 kb on - strand at 46.797 kb on - strand at 46.802 kb on - strand at 46.846 kb on + strand at 46.854 kb on - strand at 46.881 kb on + strand at 46.893 kb on + strand at 46.901 kb on - strand at 46.909 kb on + strand at 46.919 kb on + strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.955 kb on - strand at 46.983 kb on + strand at 46.990 kb on + strand at 46.998 kb on - strand at 46.998 kb on - strand at 47.033 kb on - strand at 47.068 kb on + strand at 47.106 kb on + strand at 47.106 kb on + strand at 47.114 kb on - strand at 47.125 kb on - strand at 47.135 kb on - strand, within PGA1_65p00350 at 47.144 kb on + strand, within PGA1_65p00350 at 47.152 kb on - strand, within PGA1_65p00350 at 47.200 kb on + strand, within PGA1_65p00350 at 47.205 kb on + strand, within PGA1_65p00350 at 47.213 kb on - strand, within PGA1_65p00350 at 47.228 kb on + strand, within PGA1_65p00350 at 47.236 kb on - strand, within PGA1_65p00350 at 47.309 kb on + strand, within PGA1_65p00350 at 47.314 kb on + strand, within PGA1_65p00350 at 47.314 kb on + strand, within PGA1_65p00350 at 47.317 kb on - strand, within PGA1_65p00350 at 47.322 kb on - strand, within PGA1_65p00350 at 47.322 kb on - strand, within PGA1_65p00350 at 47.322 kb on - strand, within PGA1_65p00350 at 47.322 kb on - strand, within PGA1_65p00350 at 47.322 kb on - strand, within PGA1_65p00350 at 47.322 kb on - strand, within PGA1_65p00350 at 47.322 kb on - strand, within PGA1_65p00350 at 47.385 kb on + strand, within PGA1_65p00350 at 47.393 kb on + strand, within PGA1_65p00350 at 47.411 kb on - strand, within PGA1_65p00350 at 47.421 kb on + strand, within PGA1_65p00350 at 47.473 kb on - strand, within PGA1_65p00350 at 47.538 kb on - strand, within PGA1_65p00350 at 47.568 kb on + strand, within PGA1_65p00350 at 47.597 kb on + strand, within PGA1_65p00350 at 47.605 kb on - strand, within PGA1_65p00350 at 47.622 kb on + strand, within PGA1_65p00350 at 47.627 kb on - strand, within PGA1_65p00350 at 47.629 kb on + strand, within PGA1_65p00350 at 47.629 kb on + strand, within PGA1_65p00350 at 47.630 kb on - strand, within PGA1_65p00350 at 47.630 kb on - strand, within PGA1_65p00350 at 47.637 kb on - strand, within PGA1_65p00350 at 47.764 kb on + strand, within PGA1_65p00350 at 48.034 kb on + strand, within PGA1_65p00350 at 48.034 kb on + strand, within PGA1_65p00350 at 48.184 kb on - strand, within PGA1_65p00350 at 48.272 kb on - strand, within PGA1_65p00350 at 48.431 kb on - strand at 48.431 kb on - strand at 48.511 kb on - strand at 48.535 kb on + strand at 48.584 kb on - strand at 48.590 kb on - strand at 48.714 kb on + strand at 48.714 kb on + strand at 48.721 kb on - strand at 48.722 kb on - strand at 48.722 kb on - strand at 48.722 kb on - strand at 48.886 kb on + strand at 49.051 kb on + strand, within PGA1_65p00360 at 49.059 kb on - strand, within PGA1_65p00360 at 49.097 kb on + strand, within PGA1_65p00360 at 49.153 kb on + strand, within PGA1_65p00360 at 49.368 kb on - strand, within PGA1_65p00360 at 49.398 kb on - strand, within PGA1_65p00360 at 49.455 kb on + strand, within PGA1_65p00360 at 49.455 kb on + strand, within PGA1_65p00360
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 46,055 - -0.1 46,075 - +1.1 46,075 - -0.0 46,085 - +0.1 46,163 - +0.1 46,229 + +0.8 46,229 + +0.4 46,229 + -0.5 46,237 - +1.1 46,237 - +0.4 46,264 + +0.1 46,264 + +0.8 46,264 + -0.2 46,272 - -0.5 46,276 + +1.4 46,284 - +0.4 46,322 + +0.4 46,336 + -0.2 46,355 - +0.0 46,366 + +0.2 46,530 - +0.6 46,537 + -0.4 46,537 + +0.1 46,537 + +0.8 46,537 + -0.5 46,537 + +0.6 46,545 - +0.0 46,545 - +0.5 46,561 + +0.2 46,566 + -1.2 46,569 - -0.0 46,571 + +0.8 46,579 - +0.9 46,665 + +0.5 46,665 + +0.1 46,684 - +0.1 46,750 - +0.3 46,797 - -0.0 46,802 - -0.9 46,846 + +0.3 46,854 - +1.1 46,881 + +0.8 46,893 + -0.0 46,901 - +0.2 46,909 + -0.0 46,919 + +1.0 46,949 + +0.9 46,949 + -0.0 46,955 - -0.3 46,983 + +0.2 46,990 + -0.0 46,998 - +1.0 46,998 - +0.1 47,033 - +0.4 47,068 + -0.1 47,106 + +0.7 47,106 + -0.2 47,114 - +0.7 47,125 - -0.6 47,135 - PGA1_65p00350 0.11 +0.9 47,144 + PGA1_65p00350 0.11 +0.6 47,152 - PGA1_65p00350 0.12 +1.0 47,200 + PGA1_65p00350 0.15 +0.2 47,205 + PGA1_65p00350 0.15 +1.6 47,213 - PGA1_65p00350 0.15 -0.0 47,228 + PGA1_65p00350 0.16 -0.2 47,236 - PGA1_65p00350 0.17 +0.3 47,309 + PGA1_65p00350 0.21 -0.6 47,314 + PGA1_65p00350 0.22 -0.5 47,314 + PGA1_65p00350 0.22 +0.2 47,317 - PGA1_65p00350 0.22 +1.7 47,322 - PGA1_65p00350 0.22 +0.2 47,322 - PGA1_65p00350 0.22 +0.6 47,322 - PGA1_65p00350 0.22 +0.3 47,322 - PGA1_65p00350 0.22 -0.3 47,322 - PGA1_65p00350 0.22 +0.3 47,322 - PGA1_65p00350 0.22 -0.0 47,322 - PGA1_65p00350 0.22 +1.0 47,385 + PGA1_65p00350 0.26 +1.1 47,393 + PGA1_65p00350 0.27 +0.7 47,411 - PGA1_65p00350 0.28 +0.6 47,421 + PGA1_65p00350 0.28 -0.2 47,473 - PGA1_65p00350 0.32 +0.4 47,538 - PGA1_65p00350 0.36 +0.4 47,568 + PGA1_65p00350 0.38 +1.0 47,597 + PGA1_65p00350 0.39 -0.6 47,605 - PGA1_65p00350 0.40 +0.4 47,622 + PGA1_65p00350 0.41 +0.4 47,627 - PGA1_65p00350 0.41 -0.4 47,629 + PGA1_65p00350 0.41 -0.2 47,629 + PGA1_65p00350 0.41 +0.3 47,630 - PGA1_65p00350 0.41 -0.1 47,630 - PGA1_65p00350 0.41 -0.9 47,637 - PGA1_65p00350 0.42 +0.2 47,764 + PGA1_65p00350 0.50 -1.2 48,034 + PGA1_65p00350 0.67 +0.3 48,034 + PGA1_65p00350 0.67 +0.4 48,184 - PGA1_65p00350 0.76 +1.0 48,272 - PGA1_65p00350 0.82 +0.2 48,431 - +0.8 48,431 - -1.5 48,511 - -0.6 48,535 + -1.5 48,584 - +0.2 48,590 - -0.4 48,714 + +0.9 48,714 + +0.3 48,721 - -1.0 48,722 - -0.4 48,722 - +0.6 48,722 - -0.1 48,886 + -1.4 49,051 + PGA1_65p00360 0.12 -0.5 49,059 - PGA1_65p00360 0.13 -2.4 49,097 + PGA1_65p00360 0.14 -0.8 49,153 + PGA1_65p00360 0.16 -0.2 49,368 - PGA1_65p00360 0.24 -0.2 49,398 - PGA1_65p00360 0.25 -2.9 49,455 + PGA1_65p00360 0.27 -0.2 49,455 + PGA1_65p00360 0.27 -2.6
Or see this region's nucleotide sequence