Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02090 and PGA1_262p02100 are separated by 37 nucleotides PGA1_262p02100 and PGA1_262p02110 overlap by 4 nucleotides PGA1_262p02110 and PGA1_262p02120 overlap by 17 nucleotides
PGA1_262p02090: PGA1_262p02090 - response regulator receiver domain-containing protein, at 226,474 to 226,860
_262p02090
PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761
_262p02100
PGA1_262p02110: PGA1_262p02110 - putative chemotaxis protein CheW, at 227,758 to 228,246
_262p02110
PGA1_262p02120: PGA1_262p02120 - chemotaxis protein CheA, at 228,230 to 230,365
_262p02120
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1 at 226.779 kb on + strand, within PGA1_262p02090 at 226.787 kb on - strand, within PGA1_262p02090 at 226.824 kb on - strand at 226.896 kb on + strand at 226.896 kb on + strand at 226.899 kb on - strand at 226.902 kb on - strand at 226.902 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.949 kb on + strand at 226.976 kb on - strand at 227.014 kb on + strand, within PGA1_262p02100 at 227.014 kb on + strand, within PGA1_262p02100 at 227.022 kb on - strand, within PGA1_262p02100 at 227.124 kb on + strand, within PGA1_262p02100 at 227.143 kb on + strand at 227.143 kb on + strand, within PGA1_262p02100 at 227.143 kb on + strand, within PGA1_262p02100 at 227.151 kb on - strand, within PGA1_262p02100 at 227.151 kb on - strand, within PGA1_262p02100 at 227.181 kb on + strand, within PGA1_262p02100 at 227.245 kb on - strand, within PGA1_262p02100 at 227.247 kb on + strand, within PGA1_262p02100 at 227.339 kb on - strand, within PGA1_262p02100 at 227.371 kb on + strand, within PGA1_262p02100 at 227.371 kb on - strand, within PGA1_262p02100 at 227.371 kb on - strand, within PGA1_262p02100 at 227.372 kb on - strand, within PGA1_262p02100 at 227.372 kb on - strand, within PGA1_262p02100 at 227.397 kb on + strand, within PGA1_262p02100 at 227.397 kb on + strand, within PGA1_262p02100 at 227.405 kb on - strand, within PGA1_262p02100 at 227.405 kb on - strand, within PGA1_262p02100 at 227.519 kb on + strand, within PGA1_262p02100 at 227.522 kb on + strand, within PGA1_262p02100 at 227.548 kb on + strand, within PGA1_262p02100 at 227.548 kb on + strand, within PGA1_262p02100 at 227.566 kb on - strand, within PGA1_262p02100 at 227.662 kb on + strand, within PGA1_262p02100 at 227.662 kb on + strand, within PGA1_262p02100 at 227.716 kb on + strand at 227.716 kb on + strand at 227.724 kb on - strand at 227.886 kb on + strand, within PGA1_262p02110 at 227.887 kb on - strand, within PGA1_262p02110 at 227.894 kb on - strand, within PGA1_262p02110 at 227.956 kb on - strand, within PGA1_262p02110 at 228.050 kb on - strand, within PGA1_262p02110 at 228.154 kb on + strand, within PGA1_262p02110 at 228.385 kb on + strand at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.504 kb on + strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.512 kb on - strand, within PGA1_262p02120 at 228.643 kb on + strand, within PGA1_262p02120 at 228.648 kb on + strand, within PGA1_262p02120 at 228.656 kb on - strand, within PGA1_262p02120 at 228.661 kb on - strand, within PGA1_262p02120 at 228.673 kb on + strand, within PGA1_262p02120 at 228.673 kb on + strand, within PGA1_262p02120 at 228.724 kb on - strand, within PGA1_262p02120 at 228.728 kb on + strand, within PGA1_262p02120 at 228.750 kb on + strand, within PGA1_262p02120 at 228.764 kb on + strand, within PGA1_262p02120 at 228.772 kb on - strand, within PGA1_262p02120 at 228.797 kb on + strand, within PGA1_262p02120 at 228.828 kb on - strand, within PGA1_262p02120 at 229.034 kb on - strand, within PGA1_262p02120 at 229.054 kb on + strand, within PGA1_262p02120 at 229.093 kb on + strand, within PGA1_262p02120 at 229.169 kb on - strand, within PGA1_262p02120
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 226,779 + PGA1_262p02090 0.79 -0.3 226,787 - PGA1_262p02090 0.81 -0.3 226,824 - -0.3 226,896 + -0.7 226,896 + -0.5 226,899 - -0.2 226,902 - -0.6 226,902 - +0.8 226,904 - +0.3 226,904 - -0.7 226,904 - -1.0 226,904 - -0.2 226,949 + -0.7 226,976 - -0.3 227,014 + PGA1_262p02100 0.13 -0.6 227,014 + PGA1_262p02100 0.13 +0.3 227,022 - PGA1_262p02100 0.14 -0.2 227,124 + PGA1_262p02100 0.26 +0.1 227,143 + -0.6 227,143 + PGA1_262p02100 0.28 -0.3 227,143 + PGA1_262p02100 0.28 -0.3 227,151 - PGA1_262p02100 0.29 +0.5 227,151 - PGA1_262p02100 0.29 +1.4 227,181 + PGA1_262p02100 0.33 -0.9 227,245 - PGA1_262p02100 0.40 -1.2 227,247 + PGA1_262p02100 0.40 -0.1 227,339 - PGA1_262p02100 0.51 +0.2 227,371 + PGA1_262p02100 0.55 -1.3 227,371 - PGA1_262p02100 0.55 +0.3 227,371 - PGA1_262p02100 0.55 -0.4 227,372 - PGA1_262p02100 0.55 +0.1 227,372 - PGA1_262p02100 0.55 -0.4 227,397 + PGA1_262p02100 0.58 -0.3 227,397 + PGA1_262p02100 0.58 +0.1 227,405 - PGA1_262p02100 0.59 -0.1 227,405 - PGA1_262p02100 0.59 -0.5 227,519 + PGA1_262p02100 0.72 +0.5 227,522 + PGA1_262p02100 0.72 -0.2 227,548 + PGA1_262p02100 0.75 +0.6 227,548 + PGA1_262p02100 0.75 -1.6 227,566 - PGA1_262p02100 0.77 +0.6 227,662 + PGA1_262p02100 0.88 -0.4 227,662 + PGA1_262p02100 0.88 +0.2 227,716 + -1.0 227,716 + +0.4 227,724 - -0.5 227,886 + PGA1_262p02110 0.26 -0.3 227,887 - PGA1_262p02110 0.26 -0.4 227,894 - PGA1_262p02110 0.28 +0.8 227,956 - PGA1_262p02110 0.40 +0.4 228,050 - PGA1_262p02110 0.60 -0.1 228,154 + PGA1_262p02110 0.81 +1.0 228,385 + +0.1 228,504 + PGA1_262p02120 0.13 -0.3 228,504 + PGA1_262p02120 0.13 -0.6 228,504 + PGA1_262p02120 0.13 -0.1 228,504 + PGA1_262p02120 0.13 +1.2 228,504 + PGA1_262p02120 0.13 +1.1 228,504 + PGA1_262p02120 0.13 -1.3 228,504 + PGA1_262p02120 0.13 -0.0 228,504 + PGA1_262p02120 0.13 -0.3 228,504 + PGA1_262p02120 0.13 +0.0 228,504 + PGA1_262p02120 0.13 +0.3 228,512 - PGA1_262p02120 0.13 -0.7 228,512 - PGA1_262p02120 0.13 -1.2 228,512 - PGA1_262p02120 0.13 -1.3 228,512 - PGA1_262p02120 0.13 -1.5 228,512 - PGA1_262p02120 0.13 +0.5 228,512 - PGA1_262p02120 0.13 -0.2 228,512 - PGA1_262p02120 0.13 +0.1 228,512 - PGA1_262p02120 0.13 +0.1 228,643 + PGA1_262p02120 0.19 -0.8 228,648 + PGA1_262p02120 0.20 +0.5 228,656 - PGA1_262p02120 0.20 -0.4 228,661 - PGA1_262p02120 0.20 -0.3 228,673 + PGA1_262p02120 0.21 +0.2 228,673 + PGA1_262p02120 0.21 +1.2 228,724 - PGA1_262p02120 0.23 +1.2 228,728 + PGA1_262p02120 0.23 +0.6 228,750 + PGA1_262p02120 0.24 -0.1 228,764 + PGA1_262p02120 0.25 -0.5 228,772 - PGA1_262p02120 0.25 +0.4 228,797 + PGA1_262p02120 0.27 +0.2 228,828 - PGA1_262p02120 0.28 +1.2 229,034 - PGA1_262p02120 0.38 -0.2 229,054 + PGA1_262p02120 0.39 -0.6 229,093 + PGA1_262p02120 0.40 -0.1 229,169 - PGA1_262p02120 0.44 +0.1
Or see this region's nucleotide sequence