Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01530 and PGA1_262p01540 are separated by 117 nucleotides PGA1_262p01540 and PGA1_262p01550 are separated by 56 nucleotides
PGA1_262p01530: PGA1_262p01530 - transcriptional regulator, GntR family, at 167,879 to 169,348
_262p01530
PGA1_262p01540: PGA1_262p01540 - putative enoyl-CoA hydratase / isomerase, at 169,466 to 170,272
_262p01540
PGA1_262p01550: PGA1_262p01550 - acyl-CoA dehydrogenase, at 170,329 to 172,101
_262p01550
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1 at 168.596 kb on - strand, within PGA1_262p01530 at 168.671 kb on + strand, within PGA1_262p01530 at 168.694 kb on - strand, within PGA1_262p01530 at 168.706 kb on + strand, within PGA1_262p01530 at 168.706 kb on - strand, within PGA1_262p01530 at 168.794 kb on + strand, within PGA1_262p01530 at 168.867 kb on + strand, within PGA1_262p01530 at 168.907 kb on - strand, within PGA1_262p01530 at 169.020 kb on + strand, within PGA1_262p01530 at 169.020 kb on + strand, within PGA1_262p01530 at 169.030 kb on + strand, within PGA1_262p01530 at 169.125 kb on - strand, within PGA1_262p01530 at 169.163 kb on - strand, within PGA1_262p01530 at 169.185 kb on + strand, within PGA1_262p01530 at 169.221 kb on - strand at 169.316 kb on - strand at 169.845 kb on + strand, within PGA1_262p01540 at 169.907 kb on + strand, within PGA1_262p01540 at 169.974 kb on - strand, within PGA1_262p01540 at 169.984 kb on + strand, within PGA1_262p01540 at 169.992 kb on - strand, within PGA1_262p01540 at 170.188 kb on + strand, within PGA1_262p01540 at 170.224 kb on - strand at 170.237 kb on + strand at 170.245 kb on - strand at 170.245 kb on - strand at 170.335 kb on - strand at 170.467 kb on - strand at 170.541 kb on + strand, within PGA1_262p01550 at 170.667 kb on + strand, within PGA1_262p01550 at 170.860 kb on + strand, within PGA1_262p01550 at 170.898 kb on + strand, within PGA1_262p01550 at 170.963 kb on + strand, within PGA1_262p01550 at 171.008 kb on - strand, within PGA1_262p01550 at 171.089 kb on - strand, within PGA1_262p01550 at 171.147 kb on - strand, within PGA1_262p01550 at 171.163 kb on - strand, within PGA1_262p01550 at 171.163 kb on - strand, within PGA1_262p01550 at 171.168 kb on - strand, within PGA1_262p01550 at 171.227 kb on + strand, within PGA1_262p01550 at 171.227 kb on + strand, within PGA1_262p01550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 168,596 - PGA1_262p01530 0.49 +0.8 168,671 + PGA1_262p01530 0.54 +0.3 168,694 - PGA1_262p01530 0.55 +0.1 168,706 + PGA1_262p01530 0.56 +1.2 168,706 - PGA1_262p01530 0.56 -0.6 168,794 + PGA1_262p01530 0.62 -0.2 168,867 + PGA1_262p01530 0.67 -0.4 168,907 - PGA1_262p01530 0.70 +0.1 169,020 + PGA1_262p01530 0.78 -0.6 169,020 + PGA1_262p01530 0.78 -0.4 169,030 + PGA1_262p01530 0.78 +0.7 169,125 - PGA1_262p01530 0.85 +0.2 169,163 - PGA1_262p01530 0.87 +0.3 169,185 + PGA1_262p01530 0.89 +0.2 169,221 - -0.7 169,316 - +0.0 169,845 + PGA1_262p01540 0.47 +0.8 169,907 + PGA1_262p01540 0.55 +0.2 169,974 - PGA1_262p01540 0.63 +0.3 169,984 + PGA1_262p01540 0.64 -0.6 169,992 - PGA1_262p01540 0.65 +0.3 170,188 + PGA1_262p01540 0.89 +0.5 170,224 - +0.2 170,237 + -1.7 170,245 - -0.3 170,245 - +0.0 170,335 - +0.9 170,467 - -0.0 170,541 + PGA1_262p01550 0.12 -2.2 170,667 + PGA1_262p01550 0.19 +0.6 170,860 + PGA1_262p01550 0.30 -0.8 170,898 + PGA1_262p01550 0.32 +0.8 170,963 + PGA1_262p01550 0.36 +0.2 171,008 - PGA1_262p01550 0.38 +0.5 171,089 - PGA1_262p01550 0.43 -0.1 171,147 - PGA1_262p01550 0.46 -1.8 171,163 - PGA1_262p01550 0.47 -0.3 171,163 - PGA1_262p01550 0.47 +0.4 171,168 - PGA1_262p01550 0.47 +0.1 171,227 + PGA1_262p01550 0.51 +0.1 171,227 + PGA1_262p01550 0.51 -0.3
Or see this region's nucleotide sequence