Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00750 and PGA1_262p00760 are separated by 84 nucleotides PGA1_262p00760 and PGA1_262p00770 are separated by 69 nucleotides
PGA1_262p00750: PGA1_262p00750 - Threonine dehydratase, at 84,428 to 85,453
_262p00750
PGA1_262p00760: PGA1_262p00760 - transcriptional regulator, AsnC family, at 85,538 to 86,011
_262p00760
PGA1_262p00770: PGA1_262p00770 - putative lytic murein transglycosylase, at 86,081 to 87,325
_262p00770
Position (kb) 85
86
87 Strain fitness (log2 ratio) -1
0
1 at 84.569 kb on - strand, within PGA1_262p00750 at 84.629 kb on - strand, within PGA1_262p00750 at 84.738 kb on - strand, within PGA1_262p00750 at 84.813 kb on + strand, within PGA1_262p00750 at 84.915 kb on - strand, within PGA1_262p00750 at 85.055 kb on - strand, within PGA1_262p00750 at 85.273 kb on + strand, within PGA1_262p00750 at 85.390 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.400 kb on - strand at 85.620 kb on - strand, within PGA1_262p00760 at 85.620 kb on - strand, within PGA1_262p00760 at 85.718 kb on + strand, within PGA1_262p00760 at 85.725 kb on - strand, within PGA1_262p00760 at 85.831 kb on - strand, within PGA1_262p00760 at 85.833 kb on + strand, within PGA1_262p00760 at 85.883 kb on + strand, within PGA1_262p00760 at 85.953 kb on + strand, within PGA1_262p00760 at 86.066 kb on + strand at 86.512 kb on + strand, within PGA1_262p00770 at 86.556 kb on + strand, within PGA1_262p00770 at 86.635 kb on + strand, within PGA1_262p00770 at 86.906 kb on - strand, within PGA1_262p00770 at 86.928 kb on - strand, within PGA1_262p00770
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 84,569 - PGA1_262p00750 0.14 +1.3 84,629 - PGA1_262p00750 0.20 +0.5 84,738 - PGA1_262p00750 0.30 -0.2 84,813 + PGA1_262p00750 0.38 +0.3 84,915 - PGA1_262p00750 0.47 +0.3 85,055 - PGA1_262p00750 0.61 -0.3 85,273 + PGA1_262p00750 0.82 +1.1 85,390 + +0.1 85,392 + +0.5 85,392 + -0.1 85,392 + -0.3 85,392 + -0.4 85,400 - +0.8 85,620 - PGA1_262p00760 0.17 -0.9 85,620 - PGA1_262p00760 0.17 -0.1 85,718 + PGA1_262p00760 0.38 +0.6 85,725 - PGA1_262p00760 0.39 +0.7 85,831 - PGA1_262p00760 0.62 +0.4 85,833 + PGA1_262p00760 0.62 +1.1 85,883 + PGA1_262p00760 0.73 -0.2 85,953 + PGA1_262p00760 0.88 -0.5 86,066 + -0.7 86,512 + PGA1_262p00770 0.35 -0.2 86,556 + PGA1_262p00770 0.38 +0.4 86,635 + PGA1_262p00770 0.44 -0.4 86,906 - PGA1_262p00770 0.66 +0.7 86,928 - PGA1_262p00770 0.68 -1.0
Or see this region's nucleotide sequence