Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00520 and PGA1_262p00530 are separated by 9 nucleotides PGA1_262p00530 and PGA1_262p00540 are separated by 74 nucleotides
PGA1_262p00520: PGA1_262p00520 - putative multi antimicrobial extrusion protein, at 59,832 to 61,166
_262p00520
PGA1_262p00530: PGA1_262p00530 - DNA topoisomerase 1B-like protein, at 61,176 to 62,153
_262p00530
PGA1_262p00540: PGA1_262p00540 - succinate-semialdehyde dehdyrogenase GabD, at 62,228 to 63,607
_262p00540
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1 at 60.340 kb on - strand, within PGA1_262p00520 at 60.461 kb on + strand, within PGA1_262p00520 at 60.569 kb on - strand, within PGA1_262p00520 at 60.611 kb on + strand, within PGA1_262p00520 at 60.661 kb on + strand, within PGA1_262p00520 at 60.740 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.807 kb on + strand, within PGA1_262p00520 at 60.826 kb on + strand, within PGA1_262p00520 at 61.002 kb on + strand, within PGA1_262p00520 at 61.137 kb on + strand at 61.226 kb on - strand at 61.249 kb on + strand at 61.272 kb on - strand at 61.389 kb on + strand, within PGA1_262p00530 at 61.499 kb on + strand, within PGA1_262p00530 at 61.595 kb on + strand, within PGA1_262p00530 at 61.808 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 62.111 kb on + strand at 62.129 kb on - strand at 62.316 kb on + strand at 62.632 kb on + strand, within PGA1_262p00540 at 62.632 kb on + strand, within PGA1_262p00540 at 62.642 kb on + strand, within PGA1_262p00540 at 62.852 kb on + strand, within PGA1_262p00540 at 62.860 kb on - strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 63.015 kb on - strand, within PGA1_262p00540 at 63.054 kb on + strand, within PGA1_262p00540 at 63.124 kb on + strand, within PGA1_262p00540
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 60,340 - PGA1_262p00520 0.38 -0.2 60,461 + PGA1_262p00520 0.47 +0.2 60,569 - PGA1_262p00520 0.55 +0.3 60,611 + PGA1_262p00520 0.58 -0.7 60,661 + PGA1_262p00520 0.62 +0.7 60,740 + PGA1_262p00520 0.68 +0.9 60,807 + PGA1_262p00520 0.73 +0.4 60,807 + PGA1_262p00520 0.73 -0.2 60,826 + PGA1_262p00520 0.74 +0.9 61,002 + PGA1_262p00520 0.88 +0.1 61,137 + +0.9 61,226 - -0.5 61,249 + +0.5 61,272 - +0.8 61,389 + PGA1_262p00530 0.22 +0.3 61,499 + PGA1_262p00530 0.33 -0.2 61,595 + PGA1_262p00530 0.43 +0.5 61,808 - PGA1_262p00530 0.65 +0.2 61,867 - PGA1_262p00530 0.71 +0.1 61,867 - PGA1_262p00530 0.71 +0.2 62,111 + +1.3 62,129 - -0.5 62,316 + -0.9 62,632 + PGA1_262p00540 0.29 +0.1 62,632 + PGA1_262p00540 0.29 -0.3 62,642 + PGA1_262p00540 0.30 -0.4 62,852 + PGA1_262p00540 0.45 -0.0 62,860 - PGA1_262p00540 0.46 -0.6 62,989 + PGA1_262p00540 0.55 -0.8 62,989 + PGA1_262p00540 0.55 +0.1 62,989 + PGA1_262p00540 0.55 -0.3 62,989 + PGA1_262p00540 0.55 +0.1 62,989 + PGA1_262p00540 0.55 -0.2 62,997 - PGA1_262p00540 0.56 -0.6 62,997 - PGA1_262p00540 0.56 -0.1 62,997 - PGA1_262p00540 0.56 +0.4 63,015 - PGA1_262p00540 0.57 +0.2 63,054 + PGA1_262p00540 0.60 +0.1 63,124 + PGA1_262p00540 0.65 +0.3
Or see this region's nucleotide sequence