Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36230

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c36220 and PGA1_c36230 are separated by 353 nucleotidesPGA1_c36230 and PGA1_c36240 are separated by 95 nucleotides PGA1_c36220: PGA1_c36220 - Invasion associated locus B (IalB) protein., at 3,790,037 to 3,790,615 _c36220 PGA1_c36230: PGA1_c36230 - Uncharacterized protein conserved in bacteria, at 3,790,969 to 3,791,130 _c36230 PGA1_c36240: PGA1_c36240 - ribosomal RNA large subunit methyltransferase N, at 3,791,226 to 3,792,410 _c36240 Position (kb) 3790 3791 3792Strain fitness (log2 ratio) -2 -1 0 1 2at 3789.991 kb on + strandat 3790.653 kb on + strandat 3790.653 kb on + strandat 3790.653 kb on + strandat 3790.653 kb on + strandat 3790.653 kb on + strandat 3790.653 kb on + strandat 3790.653 kb on + strandat 3790.661 kb on - strandat 3790.661 kb on - strandat 3790.671 kb on + strandat 3790.751 kb on - strandat 3790.762 kb on - strandat 3790.770 kb on - strandat 3790.782 kb on + strandat 3790.801 kb on - strandat 3790.801 kb on - strandat 3790.872 kb on - strandat 3790.887 kb on + strandat 3790.890 kb on + strandat 3790.927 kb on + strandat 3790.937 kb on + strandat 3790.937 kb on + strandat 3790.937 kb on + strandat 3790.937 kb on + strandat 3790.937 kb on + strandat 3790.937 kb on + strandat 3790.945 kb on - strandat 3790.945 kb on - strandat 3790.945 kb on - strandat 3790.945 kb on - strandat 3790.966 kb on + strandat 3790.968 kb on + strandat 3790.978 kb on + strandat 3790.986 kb on - strand, within PGA1_c36230at 3790.998 kb on + strand, within PGA1_c36230at 3791.065 kb on + strand, within PGA1_c36230at 3791.092 kb on - strand, within PGA1_c36230at 3791.110 kb on + strand, within PGA1_c36230at 3791.133 kb on - strandat 3791.179 kb on + strandat 3791.192 kb on - strandat 3791.199 kb on + strandat 3791.207 kb on - strandat 3791.207 kb on - strandat 3791.207 kb on - strandat 3791.207 kb on - strandat 3791.209 kb on + strandat 3791.248 kb on + strandat 3791.256 kb on - strandat 3791.257 kb on + strandat 3791.263 kb on - strandat 3791.267 kb on + strandat 3791.277 kb on + strandat 3791.315 kb on - strandat 3791.390 kb on - strand, within PGA1_c36240at 3791.411 kb on + strand, within PGA1_c36240at 3791.498 kb on + strand, within PGA1_c36240at 3791.513 kb on + strand, within PGA1_c36240at 3791.513 kb on + strand, within PGA1_c36240at 3791.513 kb on + strand, within PGA1_c36240at 3791.513 kb on + strand, within PGA1_c36240at 3791.521 kb on - strand, within PGA1_c36240at 3791.521 kb on - strand, within PGA1_c36240at 3791.521 kb on - strand, within PGA1_c36240at 3791.521 kb on - strand, within PGA1_c36240at 3791.538 kb on + strand, within PGA1_c36240at 3791.617 kb on - strand, within PGA1_c36240at 3791.624 kb on + strand, within PGA1_c36240at 3791.635 kb on - strand, within PGA1_c36240at 3791.643 kb on - strand, within PGA1_c36240at 3791.673 kb on - strand, within PGA1_c36240at 3791.684 kb on + strand, within PGA1_c36240at 3791.803 kb on + strand, within PGA1_c36240at 3791.817 kb on + strand, within PGA1_c36240at 3791.863 kb on + strand, within PGA1_c36240at 3791.893 kb on + strand, within PGA1_c36240at 3791.916 kb on - strand, within PGA1_c36240at 3791.986 kb on + strand, within PGA1_c36240at 3791.994 kb on - strand, within PGA1_c36240at 3791.994 kb on - strand, within PGA1_c36240at 3792.042 kb on + strand, within PGA1_c36240at 3792.050 kb on + strand, within PGA1_c36240at 3792.050 kb on - strand, within PGA1_c36240at 3792.050 kb on - strand, within PGA1_c36240at 3792.050 kb on - strand, within PGA1_c36240at 3792.089 kb on + strand, within PGA1_c36240at 3792.101 kb on - strand, within PGA1_c36240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,789,991 + +0.9
3,790,653 + -0.2
3,790,653 + -0.6
3,790,653 + +0.3
3,790,653 + -0.3
3,790,653 + -1.4
3,790,653 + +0.0
3,790,653 + +0.5
3,790,661 - +0.1
3,790,661 - -0.1
3,790,671 + -0.7
3,790,751 - -0.8
3,790,762 - +0.0
3,790,770 - -0.4
3,790,782 + +1.1
3,790,801 - -1.0
3,790,801 - -0.3
3,790,872 - -0.8
3,790,887 + +0.4
3,790,890 + -0.8
3,790,927 + -0.5
3,790,937 + -0.3
3,790,937 + +0.2
3,790,937 + -0.4
3,790,937 + -0.8
3,790,937 + -0.2
3,790,937 + -0.8
3,790,945 - -0.1
3,790,945 - -0.3
3,790,945 - +0.4
3,790,945 - -0.2
3,790,966 + +0.2
3,790,968 + +1.7
3,790,978 + +0.1
3,790,986 - PGA1_c36230 0.10 -0.0
3,790,998 + PGA1_c36230 0.18 +0.6
3,791,065 + PGA1_c36230 0.59 +0.8
3,791,092 - PGA1_c36230 0.76 -0.1
3,791,110 + PGA1_c36230 0.87 -0.1
3,791,133 - +0.6
3,791,179 + +0.5
3,791,192 - -0.1
3,791,199 + -0.5
3,791,207 - -1.0
3,791,207 - +0.8
3,791,207 - +0.6
3,791,207 - +1.1
3,791,209 + -1.7
3,791,248 + +0.7
3,791,256 - -0.3
3,791,257 + -0.2
3,791,263 - -0.8
3,791,267 + +0.2
3,791,277 + -0.3
3,791,315 - -0.9
3,791,390 - PGA1_c36240 0.14 -0.8
3,791,411 + PGA1_c36240 0.16 +0.1
3,791,498 + PGA1_c36240 0.23 -0.6
3,791,513 + PGA1_c36240 0.24 +1.1
3,791,513 + PGA1_c36240 0.24 +0.9
3,791,513 + PGA1_c36240 0.24 -0.2
3,791,513 + PGA1_c36240 0.24 +0.3
3,791,521 - PGA1_c36240 0.25 -0.9
3,791,521 - PGA1_c36240 0.25 +0.2
3,791,521 - PGA1_c36240 0.25 +0.3
3,791,521 - PGA1_c36240 0.25 +0.6
3,791,538 + PGA1_c36240 0.26 +0.3
3,791,617 - PGA1_c36240 0.33 +0.6
3,791,624 + PGA1_c36240 0.34 +0.5
3,791,635 - PGA1_c36240 0.35 -0.2
3,791,643 - PGA1_c36240 0.35 +1.2
3,791,673 - PGA1_c36240 0.38 -0.0
3,791,684 + PGA1_c36240 0.39 +0.8
3,791,803 + PGA1_c36240 0.49 -0.1
3,791,817 + PGA1_c36240 0.50 -0.3
3,791,863 + PGA1_c36240 0.54 +0.8
3,791,893 + PGA1_c36240 0.56 -1.0
3,791,916 - PGA1_c36240 0.58 +1.0
3,791,986 + PGA1_c36240 0.64 -0.2
3,791,994 - PGA1_c36240 0.65 -0.2
3,791,994 - PGA1_c36240 0.65 -0.1
3,792,042 + PGA1_c36240 0.69 -0.1
3,792,050 + PGA1_c36240 0.70 -0.2
3,792,050 - PGA1_c36240 0.70 +1.4
3,792,050 - PGA1_c36240 0.70 +1.1
3,792,050 - PGA1_c36240 0.70 -2.5
3,792,089 + PGA1_c36240 0.73 +1.8
3,792,101 - PGA1_c36240 0.74 +0.1

Or see this region's nucleotide sequence