Strain Fitness in Marinobacter adhaerens HP15 around HP15_3488

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3487 and HP15_3488 are separated by 190 nucleotidesHP15_3488 and HP15_3489 overlap by 11 nucleotidesHP15_3489 and HP15_3490 are separated by 29 nucleotides HP15_3487: HP15_3487 - RNA polymerase, sigma 32 subunit, RpoH, at 3,672,226 to 3,673,086 _3487 HP15_3488: HP15_3488 - cell division protein FtsX-like protein, at 3,673,277 to 3,674,284 _3488 HP15_3489: HP15_3489 - cell division ATP-binding protein FtsE, at 3,674,274 to 3,674,966 _3489 HP15_3490: HP15_3490 - signal recognition particle-docking protein FtsY, at 3,674,996 to 3,676,189 _3490 Position (kb) 3673 3674 3675Strain fitness (log2 ratio) -3 -2 -1 0 1at 3673.088 kb on + strandat 3673.342 kb on + strandat 3673.350 kb on - strandat 3673.455 kb on - strand, within HP15_3488at 3673.545 kb on - strand, within HP15_3488at 3673.626 kb on + strand, within HP15_3488at 3673.675 kb on + strand, within HP15_3488at 3673.678 kb on + strand, within HP15_3488at 3673.727 kb on + strand, within HP15_3488at 3673.727 kb on + strand, within HP15_3488at 3673.740 kb on - strand, within HP15_3488at 3673.742 kb on + strand, within HP15_3488at 3673.836 kb on + strand, within HP15_3488at 3673.836 kb on + strand, within HP15_3488at 3673.873 kb on - strand, within HP15_3488at 3673.930 kb on + strand, within HP15_3488at 3673.946 kb on - strand, within HP15_3488at 3673.983 kb on - strand, within HP15_3488at 3674.036 kb on + strand, within HP15_3488at 3674.104 kb on - strand, within HP15_3488at 3674.108 kb on + strand, within HP15_3488at 3674.379 kb on + strand, within HP15_3489at 3674.381 kb on + strand, within HP15_3489at 3674.387 kb on - strand, within HP15_3489at 3674.434 kb on + strand, within HP15_3489at 3674.458 kb on + strand, within HP15_3489at 3674.543 kb on - strand, within HP15_3489at 3674.556 kb on - strand, within HP15_3489at 3674.606 kb on - strand, within HP15_3489at 3674.606 kb on - strand, within HP15_3489at 3674.643 kb on + strand, within HP15_3489at 3674.673 kb on + strand, within HP15_3489at 3674.673 kb on + strand, within HP15_3489at 3674.673 kb on + strand, within HP15_3489at 3674.681 kb on - strand, within HP15_3489at 3674.681 kb on - strand, within HP15_3489at 3674.704 kb on - strand, within HP15_3489at 3674.707 kb on - strand, within HP15_3489at 3674.821 kb on - strand, within HP15_3489at 3674.917 kb on - strandat 3674.919 kb on + strandat 3674.962 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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3,673,088 + -0.7
3,673,342 + -2.0
3,673,350 - -0.0
3,673,455 - HP15_3488 0.18 -0.7
3,673,545 - HP15_3488 0.27 -2.2
3,673,626 + HP15_3488 0.35 -1.4
3,673,675 + HP15_3488 0.39 -3.0
3,673,678 + HP15_3488 0.40 -0.7
3,673,727 + HP15_3488 0.45 -1.6
3,673,727 + HP15_3488 0.45 -1.1
3,673,740 - HP15_3488 0.46 -1.1
3,673,742 + HP15_3488 0.46 -2.2
3,673,836 + HP15_3488 0.55 -1.7
3,673,836 + HP15_3488 0.55 -1.8
3,673,873 - HP15_3488 0.59 -1.0
3,673,930 + HP15_3488 0.65 -1.7
3,673,946 - HP15_3488 0.66 -1.6
3,673,983 - HP15_3488 0.70 -1.4
3,674,036 + HP15_3488 0.75 -1.8
3,674,104 - HP15_3488 0.82 -0.5
3,674,108 + HP15_3488 0.82 -2.1
3,674,379 + HP15_3489 0.15 -2.1
3,674,381 + HP15_3489 0.15 -1.0
3,674,387 - HP15_3489 0.16 -1.6
3,674,434 + HP15_3489 0.23 -2.0
3,674,458 + HP15_3489 0.27 -2.7
3,674,543 - HP15_3489 0.39 -1.6
3,674,556 - HP15_3489 0.41 -1.6
3,674,606 - HP15_3489 0.48 -1.5
3,674,606 - HP15_3489 0.48 -1.3
3,674,643 + HP15_3489 0.53 -1.4
3,674,673 + HP15_3489 0.58 -1.2
3,674,673 + HP15_3489 0.58 -3.7
3,674,673 + HP15_3489 0.58 -1.8
3,674,681 - HP15_3489 0.59 -0.0
3,674,681 - HP15_3489 0.59 -0.6
3,674,704 - HP15_3489 0.62 -2.2
3,674,707 - HP15_3489 0.62 -0.8
3,674,821 - HP15_3489 0.79 -0.6
3,674,917 - -1.2
3,674,919 + -0.1
3,674,962 + +0.1

Or see this region's nucleotide sequence